Salvelinus sp. IW2-2015 (Arctic char): 111955649
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Entry
111955649 CDS
T05762
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111955649
Membrane trafficking [BR:
salp04131
]
Protein recycling
Others
EARP complex
111955649
Endosome - Golgi transport
Tethering complex
GARP complex
111955649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF5740
CoV_NSP7
Cep57_MT_bd
MscS_porin
DUF3440
Rubis-subs-bind
ATG16
DUF1664
Motif
Other DBs
NCBI-GeneID:
111955649
NCBI-ProteinID:
XP_023831656
LinkDB
All DBs
Position
LG31:10069887..10081032
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AA seq
724 aa
AA seq
DB search
MADRAVTAAMSDVNTTVNSTANSMAYLQDEMKPDTDAMAPLNLGDLDLTTDEFILDEVDI
HIQANLDDDLVKEALKTGVDLRQYSKQVEDELQRIEQASIKDYIKESQNIASLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNMRLKNRQAVRSHLSQLVDELVVPG
AMIQVILESPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKIKAVTKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGTVLSPAEL
EGPILIPHTAQRGDCRYPYETLFRSQHYALLDNGCREFLFLSDFFMVAGNSALDLFNSVM
GKTLSLFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITNKRTIPALDKYWDAVLELLWPR
FELILEMNIQSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFTSERTHTLLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLSVLMERAADDSKEVEGFQQLLQARSQE
FIEEILSSPFGGMIAFVKEREALTEKGQLDRLKNEEARITQLVRGFSSTWKQSVEALSQD
VMRSFTNFKNGTGIIQGALTQLIQYYHGFHKVLSQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagagcagtgactgctgctatgtccgatgtaaacacaactgtcaactcaacg
gcgaattccatggcatatttacaagatgagatgaagcctgacacagatgccatggcccct
ctcaacctgggtgacttggacttgaccacagatgagttcatcttggatgaggtggacatt
cacatacaggcaaatcttgaygatgacttggtgaaggaggcactgaaaacgggagttgac
ctccggcaatactctaaacaagtggaggatgaacttcaacggattgaacaagcctccatc
aaagactatatcaaggagagccagaatattgcctctctgcacaaccagatcacagcctgt
gactccatactggagcgaatggagggcatgctgagcggcttccagagtgacctctcgtcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgaacatgcggctgaag
aacaggcaggccgtacgcagccacctcagccaactggtggatgagctggtggtgcccgga
gctatgatccaggtaatcttggagagcccggtgacagagcaggagttccttgagcagctc
catgagctcaacaacaagatcaactttgccaaagagctcagcttcagggaaactttggcc
tgctctgacatccaggacattgtggaccgcctcaaaatcaaggctgtcacaaagatccga
gaatttatcctgcagaagatttattccttcagaaagcccatgaccaactatcaaatccct
cagaacaccctcctcaagtacaggtttttttatcaattcctcttggcaaacgaaaggaca
gtggccaaggagatcagggatgagtacgtggacaccatgagtaagatctactacagttac
ttcaagtcgtacagcggcaggctcctcaaagtacagtatgaagaggtggcagacaaagat
gacttgatgggagtggaagacacggccaagaaaggtttcttctccaagccctccctgaag
agcaggaacaccatcttcaccctgggccagcgmgggaccgtgctgagccctgccgagctg
gaggggcccatcctcatcccccacactgcccagagaggggactgcaggtatccctatgag
acgctgttccgcagtcagcactacgccctcttggacaacggctgtcgagagttcctcttc
ctgtctgacttcttcatggtggcmggaaattctgcgctggacctcttcaacagcgtcatg
ggaaagacgctcagcttgttcctgaagagcatgtccacctatgtgtcggactgctacgac
agcatcgccgtgttcctgtgtatccacatcatcctgcgtttcagagccatcacaaacaag
aggaccatcccagccctggacaagtactgggatgcggtgctggagctgctgtggcccagg
tttgagcttatcctggagatgaacattcagagcatccgcaacacggatcctcaaaaactg
ggcgtgctggacaccagaccacactatatcacacgcagatatgcagagttctcttctgcc
atagtcagcattaaccagacattcaccagcgagcgaacccacaccctccttggccaactg
caggttgaagtggagaactttgtcctgaagatggctgcagagttcccttcacgcagggac
cagctcatcttcctcatcaacaactacgacatgatgctcagtgtactcatggagagggca
gctgatgacagtaaagaggttgagggcttccaacagctcctccaggccaggagtcaggag
tttattgaggagattctgtcctctccctttggtggcatgatagcatttgtgaaggagagr
gaggcgctgacggagaaagggcagctggatagactaaagaatgargaagcccgaatcacc
cagctggtcaggggtttctccagcacatggaaacagtctgtggaggctctgagtcaggac
gtcatgaggtccttcaccaacttcaagaacggcactggcatcattcagggggcgctcact
cagctgatccagtactaccatggcttccacaaggtactgtcccagcccacctttcgcagc
ctggccgtgcgctctgagctcatcaacctgcaccacctcatggtcgaagtcaagaaacac
aagcccaacttctaa
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