Salvelinus sp. IW2-2015 (Arctic char): 111955695
Help
Entry
111955695 CDS
T05762
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
salp00535
]
111955695
Proteoglycans [BR:
salp00535
]
Extracellular matrix (ECM) proteoglycans
Others
111955695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
VWA_3
DUF4959
DUF4992
Motif
Other DBs
NCBI-GeneID:
111955695
NCBI-ProteinID:
XP_023831732
LinkDB
All DBs
Position
LG31:complement(10428662..10513066)
Genome browser
AA seq
1905 aa
AA seq
DB search
MPATGLKTWVWNPLLCLALISLSPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDFES
YRFIYSTQSDAEETELEVTKKEAKVIIDFDPRKLYTVKVTAXKGARESKPLLGTFEAQLS
EPDVKNVQPQNVQPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFR
LVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGGNT
LTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIGVK
NADEKELKAIGSPPEETHVYNVADFSAMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEVTM
AAPRDLVTSEVTARSFRVSWTHSPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNYLL
SLTEYQVAVFAIYARSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASGYM
ILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTL
PLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLRNL
TSLTEYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWEHSAQDVVL
YRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESXAVTLTESTV
ARTTTTTKATTTTTTTRATTTAVVHLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYV
TARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYADGDGPGVSRMGRTLPLSAPR
NLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGT
EYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSAHRHATLYRVVIE
SLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAVTTTERTFPVPTPAP
TRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTIGP
DGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVG
GGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSER
HVFFVDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGMYGHVS
GVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITILFRLLPETPKEPFALWE
ILNKDKEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAISKT
NAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDNSAPFQLQSFDIVCSTSWA
SRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAVGP
IGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPGRE
GQTGTRGLPGKDGPQGRTGPTGTMGTPGAPGSPGSSGPPGSLGDQGPPGSAGNKGEKGER
GDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTIPGPPGEPGRQGGQGP
QGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGRTG
SQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGNGGDPSDHRNLPLV
QLPPNVYQNYDEAEDEDPYRYDAGGYPSEYYQPNYPXPRPVEPEDPALTQGDEVLRSPGI
HRSSRSLAEEEKEKKXEEGPEERKMVGPMRESRLRRVLRKSGTHN
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atgccggctacaggactgaagacgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctcagggtcaagttgccactccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagagccgaaaggagactttgaaagc
tacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtgacaaag
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacacagtcaaggtcact
gctstgaaaggtgctcgggagagcaagccacttctaggaacatttgaggcccaactttca
gagcctgacgttaagaacgtacagccccagaatgtacaacccaagaaccagaaagacacc
agtgtcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagaccccggcc
atagcggatattgtgatcctggtggacggatcatggagtatcggacggataaacttccgt
ctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgacaagaca
cggataggtctggcccagtatagtggtgaccccaggattgagtggcacctgaacactttc
accaccaaagaagcagtcatcgacgctgtgaagaaccttccctacaaaggagggaacaca
ctgacgggtcttgcattgacatacatccttgagaacagttacaaacccgagtccggatcc
agggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtc
caacccccggcgcggagtctgagagaggcgggaatagagctgtttgccattggtgtgaag
aacgccgatgagaaagagctgaaggccattggctcgcctccagaggagacgcacgtctac
aacgtggctgacttcagcgccatgagctccatcgtggagggtctgaccaggaccgtctgt
gaccgggtcgaacagctcgacaaggccatcaaaggcgacacaggcccagaagtcaccatg
gctgctcccagagacctagtgacctcagaagtgacggccaggagtttccgggtgtcgtgg
acccactcccctggcacggtggagaagtaccgggtggtgttctaccctgccagcgggggc
cagcccgaggagaaggtggtgcagggcacagtggacacagtggtgctcaactacctcctc
tccctgactgagtaccaggtggccgtgttcgccatctacgccagatcagctagcgaggcc
ctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctgtttgac
atcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggctacatg
atcctctatgccccactgaccgagggagacgccgccgacgagaaggaggtgaaagtggct
gagactgtgaacgaagtggaactggagaacctgactccagacacagagtacacagtgacc
gtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagaccacgcta
cccctgaccccggcgcggaacctccgcttctctgacgtcgaccacagctcggccaggctc
acctgggaggcgacgtccaagaaggccaacggctaccgcatcatgtacgtcaagacaaac
ggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctgaggaacctg
acgtcattgacagagtacacggtggccatctttgctatctatgacgagggccaggcagag
ccccttactgacagcttcaccactaagacagtcccagagcctctgaacctaaagaccagt
gaagtctccactgagagcttcagggtcacctgggaacactcagcccaagacgtggtcctc
tacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtgaatggt
aacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtctctctg
attgctgtctttagaaacgaggaggaaagcgakgccgtgaccctcacagagtcaacagtg
gcaagaacaacgactaccacaaaagctactacaaccacgactaccacacgagctaccacc
acagcagttgtgcatctgggtgtgaggaacctcctgcttagtgatcacaccaccttcagc
atggaggtgtcctgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtc
accgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaacagcctg
ctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccggtctacgcc
gacggagacggccccggtgtcagccgcatgggacgcaccttgccgctgtctgctcctagg
aacctgagagtttcggaggaatggtacaaccgcttccgtatcacctgggacacgccccca
tccccaactatgggctacagggtcgtctacaaacccatctctgctccgggacctgctctg
gagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtaca
gagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctcactggc
aaggccaggacattatacctgggagtgaccaatctgaacacctaccaggtgaggatgaac
agcatgtgtgcccagtggagtgcccaccgccacgccactctgtaccgtgtggtcatcgag
tcgctgctcaatggacataaacaggaggcaaggctgggaggaggagccacccggcactgc
ttcaatgacctgacagctaacacgcagtacaaaatcagtgtgtacgcccaacttcaggac
acagagggacctgcagtcaccaccacagagagaaccttccctgttcccaccccggcaccc
accagaccgcccactaccacccctcctcccaccataccctcaaccaaggaagtttgcaag
gcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggatgaaagc
ttcctgaaaatcatccgcttcctgtacagcaccacaggagccctcgacaccattggacca
gatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttcaaactc
aactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctacaaggga
gggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacggtgggg
ggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgctctcag
gacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtctttgccatt
ggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagcgagaga
cacgttttctttgtggacgatttagacgccttcaagaaaattgaggaaaagctggtcacc
tttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagtaccttg
ccaggtttcaggatgatggagatgtttggcctggtggagggtatgtatggacatgtatca
ggagtgtccatggagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaac
tccctcctcgcccagcccaccaagtttatccaccctgagggcttgccttccgattacacc
atcaccatactgttccgcctactgcctgaaacccccaaagagccctttgcattgtgggag
atcctcaacaaggacaargagcccctggtgggcgtcatcctggacaacggtggcaagacc
ctcaccttcttcaaccacgactacaaaggacagtttcagactgtyaccttcgagggacct
gagatcaagaagctcttctacggcagtttccacaagctgcacctggctattagcaagacc
aacgccaaggctgtcatcgactgtaagctggtgggggagaaggccatcaacgcggcgggc
aacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccgggggaagaag
gacaactctgcaccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcctgggcc
agccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcccgccatg
ccccgtgcctgcacctgcacacaggacagcaaaggcccccccggccccactggaccccct
ggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtggggccg
ataggtccagttggggacgctggtactcctgggctgcaggggcctcctggcccccagggc
cccagcggccgcaccatcatgggccccccgggtggtccaggagagagaggtgagaagggt
gcagctggcgctccaggaatacagggcattcctggatctcctgggtcaccaggtcgagaa
ggacaaacaggaacaaggggactgcctggtaaagatggaccccaggggcgaacaggacct
acagggactatgggcactccaggagctccrggctcaccagggtcaagtggacctccaggg
tcactgggagaccaaggacctcctggttccgctggaaacaaaggagagaagggagaaaga
ggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcagctg
atacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgcacccgtt
tcggtccgcaccattcctggacccccaggagagcccgggcggcagggcggccaaggacca
cagggagagcaggggcccgcgggcagaccagggttccccgggtccaacggagagaatgga
caaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggtgtagga
gtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcggacaggt
agccagggtccatctggtcggccggggaaccctggaactcctgggcggccgggtatccct
ggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtgggctac
aacgtaggagagggtggcaacggtggtgacccatctgaccaccgcaatcttcccttagtc
caattgccccccaacgtctaccagaactatgacgaggcggaggaygaggacccctatagg
tacgacgcgggmggctacccctccgagtactatcagcccaactacccggrgccccgacca
gtcgagcccgaggacccagccctgacccagggcgacgaggtgctgaggtcccccgggatc
caccgctcctccaggagcctggctgaagaggagaaggaaaagaaagkggaagaggggccg
gaggagaggaaaatggttggtcccatgagggagagcaggctaaggagagtcttgaggaag
tcagggacacacaactga
DBGET
integrated database retrieval system
