Salvelinus sp. IW2-2015 (Arctic char): 111955831
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Entry
111955831 CDS
T05762
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04514
Cell adhesion molecule (CAM) interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
111955831
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111955831
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
salp00535
]
111955831
Proteoglycans [BR:
salp00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
111955831
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GFIT
Motif
Pfam:
Syndecan
SDH8
TGF_beta_GS
Motif
Other DBs
NCBI-GeneID:
111955831
NCBI-ProteinID:
XP_023831930
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Position
LG31:complement(20462343..20498748)
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AA seq
413 aa
AA seq
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MKLPPCLMTILAALLAHSALGQTWVPSIDLEGSSGDEYYDDEDLFSGSGSGFPEVKVNPT
AVGVSFTTEEPLPLSTTQATGPAPSAPPAAEPNPNPDALPTPLPTEGEGESGIEWERGRE
RERERERERREKERERERERERQREIERERERERERARAAQTTISPRGPAAVPMATTSTA
TPLAESAAPSSGVQDLVTTEEEDEDVYLSPDPTTSMPMETTTEEEEEEVTTTETETTPLP
ETTAPPTTIGPALTERSSSTPFRPSVLVTTPTKATPTERSTRPQQPSTTMNNELGVNGPS
GDFEIREEDRRQGNEVVGRGRGMETGAEPDLIGNTINTGSSAAQLPQKNILERKEVLIAV
IVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQKADKQEEFYA
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccgtgtctgatgacgatcctcgcggcgctgctcgctcactccgcgctg
ggtcagacctgggttccgtctatagatctagaaggttcttctggagatgagtattatgat
gatgaagacctcttctcaggctctggatctggctttccagaggtgaaggtcaaccctaca
gcggtgggtgtgtctttcaccactgaggagcccctccccctttccaccacccaggccact
ggccccgccccctcagccccacctgcagccgagcccaatcccaaccctgacgctctcccc
accccactacccactgagggagagggggagagtgggatagagtgggagagagggagggag
agagagagggagagggaaagagagagaagagaaaaggagagggagagagaacgagagaga
gagaggcaacgggaaatagagagggaacgagaaagagaacgtgaaagagcgagagccgcc
cagaccaccatctcaccccgtggcccggcggctgttcccatggcgaccaccagcacagcg
acgcctctggcggagagcgcagcaccctctagtggcgtgcaggacctggtcaccacagaa
gaagaggacgaggatgtctacctgtccccagaccccaccaccagtatgcctatggagacc
accacagaagaagaagaagaagaagtgaccactacagagacagagaccacacccctccca
gagacaacagctccacccactacgattggcccagccctaactgagaggtctagctccacc
ccctttaggcccagtgttctggtgaccacgcctactaaagccacacccacagagaggagc
acacgcccacagcagccctctacgacaatgaacaatgaattaggggttaatggacccagc
ggagactttgagatccgggaggaggaccgtcgccagggcaatgaggttgttgggcgtggc
cgtggcatggagactggggcagaacctgatctgattggcaacacaattaacacaggaagt
tctgccgctcaacttcctcagaagaacatcttggagaggaaggaggttctgatagcggtg
atagtggggggcgtggtgggggcactgttcgcagcgttcctggtcatgctgctggtgtac
aggatgaagaagaaagatgaaggcagctacacgctggaggaacccaagcaggccaccgtc
acctaccagaaagctgacaaacaggaggagttctacgcataa
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