Salvelinus sp. IW2-2015 (Arctic char): 111956108
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Entry
111956108 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111956108
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111956108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
OVT1
Motif
Other DBs
NCBI-GeneID:
111956108
NCBI-ProteinID:
XP_023990503
LinkDB
All DBs
AA seq
1540 aa
AA seq
DB search
MLILHIASLLTLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHKLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREMYDERLNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIRPYKCWTQSYPWSGHVTFRPATMVIERSMDFGXKWQVYRYYSYNC
ESAFPGISVGPMVKVDDIICDSRYSDIEPSAEGEVIFRVLDPAFQIEDPYSPRIQNMLKI
TNLRVQFTKLHTLGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCAPVDGIHVGT
EGMVHGHCMCNHNTEGLNCEHCKDFYNDLPWRPAEGRNTNACKMCECNYHSRSCHFDMPV
YLSTGNVSGGVCDECQHNTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPTGSLQGGE
CDGRTDVSAGLIAGQCRCKTSVEGERCDHCRQGHYGLGPALQNVVLPGQGGGFVSRGVPE
GKPTEFHDQATYLTSRTYACYRYEPQLPEQWEQVEIRVIRPYSMRVGQPASPCENTLQGG
DQQSVSLPPGSRHVLLPRPVCLEKGRNYTVRLSLPLYSSLSDVQSPYTLIDSLVLIPRVR
ELELFEGSQGEEAWDTFQRYRCLESSQSVVKSPMTDICNDYIFSVSALLHQGAMACQCDS
QGSLSAVCDPSGGQCQCRPNVAGRNCDRCAPATFLFSPLGCRRCECSPTGSVNAFCHEAT
GQCECVPGASGRQCAHCLPGYWGFPQCQPCQCNGNSDYCHPQTGECQGCRAFTTGHMCER
CLDGYHGDPVLGLGGHCRPCMCPDGPGSGHQYADSCYQTANNYQLVCVCSPGYRGARCDE
CAPGHYGNPQVPSGRCLPCQCNDNIDQLDPGSCDARTGVCLKCLHHTEGYGCQRCKLGYY
GNAASQSCRKCMCYSVGTTSEACPSPGECHCDLQTGQCPCRTNVIGQNCDSCAPDTFNIG
SGQGCQTCDCDPTHSFGTSCNELSGQCSCRSGFGGRKCNECRDKFWGDPEVKCQACDCDL
RGIASEQCHRSSGQCVCVEGVSGPRCNQCARGYHGTFPACERCHQCFXXWDRVVGELSNQ
TQRLKDHVTELQTSGVTAPYKDTVSSLEISANAISAIVENNPAIQKMEDVQQMMQQATYV
HTNTCACLNERLNVSEDSLSRLVVNANDTEASLDALRKQAQEQERTVTDIRDHIKTVKNT
NIEGAMDTITKAHLESKRAEIRVNQTTSYPDNTLEQSATLRRZAEARLSQNQAEFDLRQQ
KHTEXLEXLATELNTLDLSXXSKQTCGAAGGEEGCAASPCGGVGCVSEDGTLRCGGEGCD
GLVTQTQSTLKTAKDFDQEILSTVQEVDKLSRMVWEVNVRADEVKLSAQEVLLKSNQSRD
RVEESNEQLRSLIKEIRDLLTNDRAKVEVIEAVSNEVLALEMPTSSEQLEALTKEIRDRV
GTLTSVEDILSQSANDIHTAERLLEQARTARXDARTSSEAKELLTQTSVNLQRLRELERS
YAANQRTLEAKTVQLAGLEKTARQLLNDISQKVMVYSTCS
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattgcacatcgcatcacttttgaccctcgggtggcgctcctttgcccagctg
ccggagtttggggatgtgtgcactgaggggagctgctaccccgccaccggggaccttctg
atcggccgtgcgcacaagctcaccgcctcctccacctgcggcattgagaagcctgagcgc
ttttgcatcgttggtcacttggaggaggagaagaagtgttttgtgtgtgactccagggag
atgtatgatgagaggctgaaccacaccaccagccacagcatcgaaaacttggtcaccacc
tttgcccccaaccgcctcaagacctggtggcagtctgagaatggtgtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacacatctcatcagaccttataagtgc
tggacccagagttatccctggtcgggtcacgtgacgttccgtccggctaccatggtgatc
gagcgttccatggattttgggamgaagtggcaggtgtaccgttaytatagctataactgt
gagtccgccttccctgggatatccgtgggacccatggtcaaagtggacgacatcatctgt
gactctcgctactctgacatagagccgtccgcagagggagaggtgatattcagggtgctg
gacccagcgtttcagattgaagacccttacagtccyaggatacagaacatgctgaagatc
actaacctgcgtgtccagttcacgaagctccacacactgggtgacaacctgctggactcc
agagacgaggtcacggagaaatactactacgccctcttcgacatggtcgtccgcggcaac
tgcttctgctacggacatgcctccaaatgcgcccctgtcgatgggatacacgtaggcaca
gagggcatggtccatggtcactgtatgtgtaaccacaacacagagggtctgaactgtgag
cactgtaaggacttctacaacgacctgccctggaggcctgcagagggacgcaacaccaat
gcctgcaagatgtgcgagtgtaactaccactccaggtcatgtcactttgacatgcctgtg
tatctgtctacggggaacgtgagtggaggagtatgtgatgagtgtcaacataacaccatg
gggcgtcagtgtgagcagtgcagacccttctactaccagcaccccgaaagacacctgaga
gaccccaacatctgtgaaccgtgtagctgtgacccgacgggctccctgcagggtggtgag
tgtgacggcaggacagacgtgtctgctggtctgatagcaggacagtgtcgctgtaagacc
agtgtggagggagagcgctgcgaccactgtagacagggacactacggcctgggccctgct
ctccaaaacgtagtcctacctggacagggcggggggtttgtcagtaggggggtacctgag
gggaagcccacggagttccacgatcaagcaacctacctgacgtccagaacttacgcatgc
tatcgctatgaaccacagttgccggagcagtgggagcaggtggagatcagagtgatacgt
ccgtactcaatgagagtgggacagccagccagtccatgtgaaaacacgctacaaggagga
gatcagcagtcggtgtctcttcctccaggatccagacatgtgctgctcccgaggcctgtg
tgtctggagaaggggcggaactacacggtgcgtctcagtctgcctctctactcctctctc
agtgacgtccaaagcccctacacgctcatcgactccttggtgttgattccgcgggtgcgt
gagctggagctgtttgagggttctcagggcgaggaggcgtgggatacgttccagaggtac
cgctgtctggagagcagccagagcgtcgtcaagagccccatgacggacatctgcaacgac
tacatcttcagtgtgtctgccctgctacaccagggggctatggcgtgccagtgtgactcc
cagggctctctcagtgcagtgtgcgaccccagcggcgggcagtgccagtgtcggcccaac
gtggcaggcaggaactgtgaccgctgtgcccccgccaccttcctgttcagccccttagga
tgcagacgctgtgagtgtagtcctacgggctctgtgaacgctttctgccacgaggccaca
ggtcagtgtgagtgtgttccaggggcgtcagggcgtcagtgtgcccactgcctgccaggc
tactggggcttccctcaatgccagccctgtcagtgcaatggcaacagcgactactgccac
cctcagactggggagtgccagggctgccgcgccttcaccaccgggcacatgtgtgaaagg
tgtctggatggttaccatggcgacccagtgttgggtttggggggtcactgccgcccctgc
atgtgtcccgacgggccggggagcgggcaccagtacgcagacagctgctaccagaccgcc
aacaactaccagctggtctgtgtctgyagccctggatacagaggagccaggtgtgacgag
tgtgccccaggtcactatggtaacccccaggtgcccagcgggcgctgtctgccctgccag
tgtaacgacaacatcgatcagctggacccggggtcctgcgacgctcgcacaggcgtctgc
ctcaaatgcctgcaccataccgagggctatggctgccagcgctgcaagctaggttattac
ggcaatgccgccagccagagctgcaggaagtgtatgtgttattcagtgggcacaacgtcg
gaggcgtgtccgtccccgggggagtgtcactgtgacctgcagactggccagtgtccctgc
cggactaacgtgattggccagaactgygacagctgtgcccctgatacgttcaacattgga
agcggacagggctgccagacctgtgactgtgacccaacccactcttttgggacgtcgtgc
aacgagctgtcagggcagtgctcgtgcaggtcaggtttcgggggaagaaaatgcaacgag
tgccgagataagttctggggagaccctgaggtcaaatgtcaagcgtgtgactgtgacctg
cgtggcatcgccagcgagcagtgccaccgttcgtccggccagtgtgtgtgtgtggagggt
gtgtctggaccccggtgtaaccartgtgccagagggtaccatgggacgttccccgcctgc
gaacgatgccaccagtgctttgyygmgtgggaccgcgtggtaggggaactgtccaatcag
actcagcgtttgaaggatcatgtgacagagctccagaccagtggggtgacggcgccgtac
aaagacaccgttagcagtctggagattagtgctaatgctatcagtgcgatagtagagaac
aaccctgctatacagaagatggaagatgtacaacagatgatgcagcaggccacgtatgta
cacacaaacacgtgcgcttgcctgaacgagaggctgaacgtctcagaggattccctgtcc
cgtctcgttgtcaatgccaacgacaccgaggccagtctggacgcactgagaaagcaggcc
caagagcaagaaagaacagtcacagacattcgagaccacataaagactgtgaaaaacact
aacatagagggagcgatggacaccatcaccaaggcccacttggagtctaagagggcggag
atccgtgtcaatcagaccaccagttaccccgacaacactttggaacagtcggctacacta
cggcgysaagcggaggccagactgagccagaaccaggcggagtttgacctgagacaacag
aaacacacagagrgactggagakgctcgccacagagctcaacactcttgacctatcagas
ytcagcaagcagacatgtggagcggctgggggggaggaggggtgtgctgcgtccccctgt
ggaggggtgggrtgtgtgtcggaggayggcacccttcgctgtggtggggaggggtgtgac
ggtttggtcacacagacacaaagcactctgaaaacagcaaaggacttcgaccaggaaatc
ctctccaccgtgcaggaagtggacaagctctccaggatggtgtgggaggtgaatgtgcgt
gcggacgaggtcaagctgagtgctcaagaggtgctgctgaagtccaaccagagccgagat
agagtggaagagagcaacgagcagctccgcagcctcatcaaggagatacgagacctactc
actaacgaccgtgccaaagtggaggttattgaagcggtgtcaaatgaggtrttggccctg
gagatgcctacatcgtccgagcagctggaggccctgaccaaggagatcagagacagggtg
ggraccctcaccagcgtggaggacatcctcagtcagagtgccaacgacatacacactgca
gagaggctgctggagcaggcccgcaccgccaggtaagatgcacgcacatcctcagaggcc
aaggagctgctcacccagaccagtgtaaacctacagagactcagagagttggagaggtcg
tatgcggccaaccagcgtactctggaggccaagacagttcagctggccgggctggagaaa
acagcacgccagctgctcaatgacatcagccagaaagtaatggtctacagcacctgttct
tag
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integrated database retrieval system
