Salvelinus sp. IW2-2015 (Arctic char): 111956113
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Entry
111956113 CDS
T05762
Name
(RefSeq) thrombospondin-3b
KO
K04659
thrombospondin 2/3/4/5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04145
Phagosome
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111956113
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111956113
09144 Cellular community - eukaryotes
04510 Focal adhesion
111956113
09142 Cell motility
04820 Cytoskeleton in muscle cells
111956113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111956113
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111956113
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111956113
Membrane trafficking [BR:
salp04131
]
Endocytosis
Phagocytosis
Opsonins
111956113
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111956113
Exosomal proteins of colorectal cancer cells
111956113
Exosomal proteins of bladder cancer cells
111956113
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111956113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
111956113
NCBI-ProteinID:
XP_023832323
LinkDB
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Position
LG31:13827336..13858810
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AA seq
954 aa
AA seq
DB search
MDMGRLMQHFLLVSASLLLGFSRSSEMQVIDMLELHDAKQSASAVGKMSGALGFVSDLYL
VSTLRLPHKLGGVLLGVYNKDDNRKYLEVALMGKVNKVLVRYVREDGKLHTVNLQNPGLS
DGRTQSLILHVGGLRRNHLHMELYVNCRLADSAQVLPSFVQLPSEAESVEIRNGQKAYAR
LQGSVDSLKLALGGSIAKAGILTDCPFQGDTYFQNSAGADVNAILGDHTKALIGQLIIFN
QILGELREDIRQVKEMSLIRNTILECQACGFHEPQSRCEPNLCYKGVPCTETREYPGYRC
GACPEGMTGNGTHCQDIDECAVARPCFSPEGCVNTAKGFTCDPCPVGFSGSLLSGVGVEF
AKSHKQECTDVDECADLSNTCIPNSVCINTEGSFMCGPCKESFVGNQTVGCFLRRSCAML
GFNPCDVNAHCVIKGAAEVSCECNVGWAGNGYTCGPDTDSDGYPDQPLPCIDNDYHCRAD
NCVNTPNSGQEDADGDGIGDQCDEDADGDGIQNVEDNCRLVPNKDQQNSDTDSYGDACDN
CPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKMPNPMQTDRDGDGVGDACDSC
PEVNDPLQSDMDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGDECDD
DDDNDGIPDAGPPGPDNCRLIPNPSQTDTDRNGIGDMCENDFDNDSVIDLIDVCPESAEV
TMTDFRAYQTVILDQEGEAQIDPNWIVLNRGMEIVQTMNSDPGLAIGITAFNGVDFEGTF
HINTATDDDYVGFIFGYQDSSSFYVVMWKQMEQTYWQSLPFRAIAQPGLQLKAVKSRTGP
GEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQVGYIRVRLYEGMTLV
ADSGVVVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQIHVRV
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggatatggggaggcttatgcaacattttctacttgtgagcgcgtcgcttctcttgggc
ttcagcaggtcttcagaaatgcaagtgattgacatgctggagctgcacgacgccaagcag
agtgcgtccgcggtggggaagatgtcgggggctctgggcttcgtgtcggacctgtacctg
gtgtccactctgcgactgccgcacaaactgggaggagtgctgctgggcgtctacaacaaa
gacgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctatgtacgtgaggacggtaaactccacacagtgaacctccagaaccccggcctctcc
gacggacgcacccagtcactcatcctccacgtgggtgggctccgacgaaaccacctccac
atggaactctatgttaactgccgattggccgactcagcacaggtcctgccgtcatttgtc
cagctcccatcagaggcggagtctgtggagatacgcaatgggcagaaggcctatgccagg
ctacagggctcagtggactctctgaaactggctctgggtggctccatagccaaagcagga
atcttgaccgattgtccatttcagggtgatacatattttcaaaattcagctggtgccgat
gttaatgccattctgggtgaccacaccaaggctttgattggccagctgatcatcttcaac
cagatcctgggtgaactccgagaggacatcagacaggtgaaggagatgtctctgattagg
aacaccattctggagtgccaagcgtgtggcttccacgagccccagtctcgctgcgagccc
aacctctgctataagggcgttccctgtacagagacccgggagtaccccgggtaccgttgt
ggtgcctgcccagaaggcatgacggggaatggcacccactgccaggacattgacgagtgt
gctgtagcccggccctgtttctcgcccgaggggtgcgtaaacacggccaagggcttcacc
tgtgatccctgtcccgtcggcttctcaggatccctcctcagtggggttggggtggagttt
gccaagagccacaagcaggagtgcacagatgtggatgagtgtgctgacctctccaacacc
tgcatccccaactctgtctgcatcaacacagagggctcgttcatgtgtggtccgtgtaag
gagagctttgtgggcaaccagacggtgggctgtttcctgcggaggtcctgcgccatgctg
ggcttcaacccctgcgacgtcaacgcccactgtgtcataaagggtgctgccgaggtctcc
tgcgagtgtaatgtgggctgggcaggaaatgggtatacgtgtggtccagacacagacagc
gacggctaccccgaccagcctctcccctgcatagacaatgactatcactgtcgagccgac
aattgtgtgaacacacccaactctggccaggaagacgcagacggagacggaatcggtgac
cagtgtgacgaagatgcggacggagacggaatccagaacgtggaggacaactgccgtctg
gtccccaacaaggaccaacagaactcggacacagactcatatggggacgcgtgtgacaac
tgccccaatgttcccaacggcagccagaaggacaccgacggaaatggggctggcgacacc
tgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaagatg
cccaaccctatgcagacggaccgtgacggggatggagtgggagacgcatgtgacagctgc
ccagaagtcaacgaccccttgcagtctgacatggacaatgacctggtgggagatgtgtgt
gacaccaaccaggatatggatggggacggccaccaggactccagggacaactgtccagat
gtccctaacagctctcagctggactcagacaacgacggcatcggcgacgaatgcgacgac
gacgacgacaacgatggcattccagatgcgggacctcccgggccggataactgccgtctc
atccccaaccccagccagacagacactgacagaaatggcattggtgacatgtgcgagaat
gactttgacaatgactcagtgatagacttgattgacgtgtgtccagagagcgctgaggtc
acaatgaccgacttcagagcctatcagacagtcatcctggaccaggagggcgaagcccaa
attgaccccaactggatagtgctcaatcggggtatggaaattgttcaaaccatgaacagt
gaccctggtttggccataggcatcacagcctttaatggggtagactttgaggggacgttc
cacatcaacacggccacggacgatgactatgttggcttcatcttcggctaccaggactcg
tccagcttctacgtggtcatgtggaaacagatggagcagacctactggcagtcgctgcct
tttagggccattgcccagccaggcctgcaactgaaggcagttaagtcacgtacaggtccc
ggtgagtacctccgtaatgccctctggcacacgggcgacaccccgggtgaggtcaccctg
ctgtggaaggaccccaggaatgtgggctggagggacaagacatcttaccgttggcacctc
agccaccgcccgcaggtgggctacatcagggtgaggctgtatgaaggcatgacattggtg
gcagactctggcgtggtggtggacacgtcaatgaggggcgggaggctgggcgtcttctgc
ttctcccaggagcaaatcatctggtccaacctgggctaccgctgcaacgatactgtacca
gaggactatgagttctaccgcaagcagatccacgtcagggtgtga
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