Salvelinus sp. IW2-2015 (Arctic char): 111956308
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Entry
111956308 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04382
Cornified envelope formation
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111956308
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111956308
09142 Cell motility
04820 Cytoskeleton in muscle cells
111956308
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111956308
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111956308
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111956308
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111956308
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111956308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111956308
NCBI-ProteinID:
XP_023832533
LinkDB
All DBs
Position
LG3:complement(19756788..19844143)
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AA seq
1678 aa
AA seq
DB search
MTALESYVATQSWACPWLCGGSKCDCSGDKRRQGERGFPGLQGQPGVPGFPGPEGPIGGR
GEKGSDGLSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPGPRGTAGCNGTKGERGFP
GSPGFPGLEGRSGPPGLPGQKGDPGDVISNDRFGQKGGVGLPGLPGVPGSPGLAGLSGPV
GPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLLGPPGPPGQVGEQKRPTELE
IQRGEKGDQGLPGPAGDPGYPGPPGVSGGSKGEKGEPGEAGNRGKPGKDGDPGPAGFPGS
KGDSGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPKGEPGFPGSSGRKGDTGQ
PGLSGPPGQPGTPGNGGVGQPGSPGFPGERGQKGDEGQPGISRPGPPGRNGSPGLQGPPG
PPGVAGVSTGGGNCLGGAPGLPGQQGDRGFQGESGQKGDKGETCVNCFSRGNSITGAPGP
PGPPGFPGGPGGPGAKGDRGYPGGPGPSGSSGLPGPQGAPGFPGEKGDPGEAIAVDGGRG
DKGDTGFPGPSGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGERGPPGEPGLQGIPGDRG
VPGSPGFGPQGPSGEKGVQGVSGRTGTPGAPGTKGEPGQTIAEKGLPGPRGQDGDPGLPG
NPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSSGVPGGPGGPGRPGVDGL
PGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLAGPKGDSGFPGNPGSPGRSGFDGGPGAK
GDSGIPGISGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGANGEKGDPGSPGLDIPGL
PGDRGSPGFPGNPGGVGPQGNPGGPGRDGLPGLPGGKGDMGVMGTPGPLGSPGNPGAPGF
PGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQELKGGKGEPGAPGLGGLPG
QKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPGGPGAKGNMGEMGFPGPTG
AKGTPGQSGRSGGPVVQEHQGSLAKGEPVPWLGSPGLRGPKGEPGQSGFPGQNGIKGTSG
TPGLPGFPGGPGAKGDPGLPGFQGSSGIPGPKGLDGIPGNPGLSGPPGRPGENGRAGSPG
FPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPGAKGDLGTPGSSGSPGFPGQ
KGEMGFPGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGRGGPPGSEGPRGPVGSGGTK
GEKGISGIPGSPGFPGAKGEFGTPGFPGNSGLPGTKGLKGDLGLPGVPGFPGPKGDSGIP
GSSGLPGEPGDAGTXGPPGDPGFAPAPIVLKGERGSPGPSGLPGGRGATGPPGLEGLSGQ
PGQPGDPGPEGPPGFSGASGRKGDPGPAGQPGERGYPGPPGSDGLQGPPGPSGSASVAHG
FLITRHSQGEDVPICPEGTGLIYDGYSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFC
NINNVCNFASRNDYSYWPVSYTHLDVYKRQRYNRRLXFDHVXVCVFNHSSMCVCFRCAVC
EAPAMVIAVHSQTIQIPTCPNYWEPLWIGYSFIMHTSAGAEGSGQALASPGSCLEEFRSA
PFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVSRCVVCMKRT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgttggagtcgtacgtggccacgcagtcgtgggcctgtccatggctgtgcggc
ggatcaaagtgtgactgcagcggagataaaaggaggcaaggcgagaggggtttcccagga
ctacagggtcagccaggcgtaccagggttccccggacctgaggggccaatcggaggcagg
ggagagaagggtagtgacggactttcagggccatccggtccaaaaggaattaggggacct
cctggactgcccggattcccaggaacaccaggaattccaggtctcccaggacaggacggg
cccccgggcccaagaggaactgcaggctgcaacgggactaagggcgagagaggattccct
ggaagtccagggttccccggactggagggccgatcgggtccacctggtctgccgggacaa
aagggagacccaggtgatgtcatctcaaatgaccgctttggacagaaaggaggtgtaggt
ttacctggcttgcctggagttcccggtagcccaggccttgcaggattgtcaggccctgtc
ggtccacctggccccagaggttatgagggtcgttctgggcctcctggtcctcccggtcct
aagggtaacatgggattgaacttccaaggtcccaaaggagataagggggatccaggtctg
ctggggcctcccggtccaccaggacaggtcggggagcagaagagacccacagagttagag
atccagagaggagagaaaggtgatcaaggtttacctggtccagctggtgatcctggttat
cctggtccccctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagca
ggcaaycgcggcaaaccggggaaagatggcgacccaggtcctgctggattccctggtagt
aaaggagactcaggcggcccaggtctgccaggtcgggacggtgacaggggggacaaaggt
gaccgtggataccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtg
gggccaaaaggagagcctggtttccccgggtcatcaggaaggaaaggagacacaggacaa
cctggtctctcaggtcctccaggccaaccaggaaccccaggtaatggaggtgtaggccaa
cccggttccccaggcttcccaggagagaggggccagaagggagacgagggccagccaggc
atctcccgccctgggcccccaggacgaaatgggtcccctgggcttcagggaccaccaggc
cctcccggggtcgcaggggtctccacagggggcggtaactgtttaggaggggcccccggt
ttaccaggacaacaaggagacagagggtttcaaggagagtccggacagaaaggtgacaag
ggagaaacctgtgtaaactgtttctcacgtgggaattccatcaccggggcaccaggccct
cccggacctcctgggttcccaggtggaccaggaggaccaggggctaaaggtgacagagga
tatccaggtggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacct
ggtttcccaggagagaagggtgacccaggtgaggctattgctgtggatggggggaggggc
gacaagggagacacagggttccctggaccctctggcctgcctggtctggacggaggacct
ggtcgcaatggagttcctggagctcctggacccaaaggaacatctggttctctgttagtg
aagggtgagcgagggcctccaggtgagcccggtctgcagggtataccaggtgacaggggt
gtccccggatccccaggcttcggccctcaggggccatctggagagaagggtgttcagggc
gtctcagggagaacgggaacacctggagcaccaggcaccaaaggggagccgggccaaacg
atagcagagaagggactcccaggacccaggggacaggatggagaccccggtcttcctgga
aacccaggcaaccccggcgggccaggacagcccggtttccccggcttaccaggtgccaag
ggcgaccccggcctctccggcattggactgccaggaccccccggcgctaaaggattccca
ggctcatctggtgtgccaggtggtcccggaggtccaggaagaccaggagtggacggcctc
cccggtgagccaggtggacctggagctaagggagagccaggattcgggttgccaggtccc
cagggccctccaggcttccctggacccaaaggattagctggacccaaaggagactccggt
ttccccggcaaccccggctcgcccggacgttccggcttcgacggtggccctggtgccaaa
ggtgactctggtatccctggtatatccggagcccgtggccctccaggttcaccctccatc
ggctctcagggcatccccggccccattggacccccaggacccatgggctctccaggatac
tcaggcgccaacggagagaagggagaccccggttctcccggcctggacattccagggttg
ccaggcgacagaggaagtcccggtttccccggcaaccccgggggagttggaccacagggt
aaccctggtggccctggccgagacggacttcctggcctgcctggtggtaaaggagacatg
ggtgtgatgggaactcctggacctctgggatcccctgggaaccccggagcccccggcttc
cctggacctaaaggtgacgatggtttcccagggcgaccaggtgggcccggcggttcaggt
ttgaagggagacaggggagagcccggtatcgcgggactcccaggacccagcattcctccc
caggaactgaagggtggcaagggagaaccaggagcaccaggtttgggaggactgccaggt
caaaagggtatccctggtctccctggagacgctggtataccaggacaggacggacgacct
gggttgccaggacctcaaggtcccaaaggagatgcaggtatccctggaggatcaggctca
ccaggaggcccaggagctaaaggcaacatgggagagatgggcttcccaggacccacaggg
gcgaaaggaactccgggtcaatcaggtcggtcgggtggacccgtagttcaggagcatcag
ggttccctggctaagggagagcccgtcccctggcttggttccccaggactacgaggtccc
aagggtgagcccggtcagtcaggattccccgggcaaaacggaataaaaggaacttccgga
acaccaggtcttccagggtttcctggcggtcccggcgccaaaggtgaccccggcctccca
ggattccaaggttcttccgggattcccgggcctaagggtctggatggtatccccggtaac
cccggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctggg
ttcccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaa
ggagacccaggtcttcctggtttcggtggccccggttctcctggtctcccaggattacca
ggtgctaagggggatcttggcacccctggttcttccggtagccctggcttccctggtcag
aagggagagatgggtttccctggcctgcctgggtcccctggcagcgttgggccacctggc
gccccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctgga
agaggaggtcctcctggctctgaaggtccccgtggccctgtcggcagcggtgggaccaaa
ggtgagaagggaatttccggaattcctggatcgcctggtttccccggagcgaagggagaa
tttggaacgcccggattcccgggtaattctggccttcctggtaccaaagggttgaaggga
gacctcggactgcctggagttcccggattcccaggaccaaagggagattctggaatccct
ggatcatctggtctccctggagaacccggagatgctggcactyctggacccccaggtgac
ccaggttttgctccagcccccatcgtgctgaagggagagcgtggctcccctggcccttca
ggtctaccaggcggccgtggcgccacaggaccccccggactggagggactctcaggtcag
cccggtcagccaggagaccccggtcctgagggacccccaggattcagtggagcctccggs
cgcaagggagacccaggacccgccggacagccaggtgagcgtggatatcccggtccccct
ggttcagatggcctgcagggccccccaggtccatctggatctgcctctgtggcgcacggc
ttcctgatcaccagacacagtcagggcgaggacgtccccatctgcccagagggcaccggc
ctcatctacgacggctactctctgctctacgtacagggcaacgagagggcacacggacag
gacctgggaactgctggaagttgcctgcgtcggttcagcaccatgccattcatgttctgt
aacatcaacaacgtgtgtaacttcgcctcccgtaacgactactcctattggcctgtctct
tatacacatctagatgtgtataagagacagagatacaataggagactgtgatttgatcat
gtctgagtgtgtgtatttaaccactcctctatgtgtgtgtgttttaggtgtgcagtgtgt
gaggcccctgccatggtgatcgctgtacacagtcagaccattcagatccccacctgcccc
aactactgggaaccactgtggatcggatactccttcattatgcacactagtgctggtgct
gagggttcgggtcaggctctggcctctccrggctcctgtctagaggaattccggagcgct
cccttcatcgagtgccacggtcgggggacctgcaactactacggcaactcctacagcttc
tggctggccaccgtcgaccaatcagaaatgttcaggaagccacagtcggagacgctgaaa
gcaggtaacctgcggacgcgcgtcagccgctgtgtggtctgtatgaagaggacgtaa
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