Salvelinus sp. IW2-2015 (Arctic char): 111956308
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Entry
111956308 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111956308
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111956308
09142 Cell motility
04820 Cytoskeleton in muscle cells
111956308
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111956308
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111956308
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111956308
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111956308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111956308
NCBI-ProteinID:
XP_023832533
LinkDB
All DBs
Position
LG3:complement(19756638..19810023)
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AA seq
1678 aa
AA seq
DB search
MTALESYVATQSWACPWLCGGSKCDCSGDKRRQGERGFPGLQGQPGVPGFPGPEGPIGGR
GEKGSDGLSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPGPRGTAGCNGTKGERGFP
GSPGFPGLEGRSGPPGLPGQKGDPGDVISNDRFGQKGGVGLPGLPGVPGSPGLAGLSGPV
GPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLLGPPGPPGQVGEQKRPTELE
IQRGEKGDQGLPGPAGDPGYPGPPGVSGGSKGEKGEPGEAGNRGKPGKDGDPGPAGFPGS
KGDSGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPKGEPGFPGSSGRKGDTGQ
PGLSGPPGQPGTPGNGGVGQPGSPGFPGERGQKGDEGQPGISRPGPPGRNGSPGLQGPPG
PPGVAGVSTGGGNCLGGAPGLPGQQGDRGFQGESGQKGDKGETCVNCFSRGNSITGAPGP
PGPPGFPGGPGGPGAKGDRGYPGGPGPSGSSGLPGPQGAPGFPGEKGDPGEAIAVDGGRG
DKGDTGFPGPSGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGERGPPGEPGLQGIPGDRG
VPGSPGFGPQGPSGEKGVQGVSGRTGTPGAPGTKGEPGQTIAEKGLPGPRGQDGDPGLPG
NPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSSGVPGGPGGPGRPGVDGL
PGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLAGPKGDSGFPGNPGSPGRSGFDGGPGAK
GDSGIPGISGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGANGEKGDPGSPGLDIPGL
PGDRGSPGFPGNPGGVGPQGNPGGPGRDGLPGLPGGKGDMGVMGTPGPLGSPGNPGAPGF
PGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQELKGGKGEPGAPGLGGLPG
QKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPGGPGAKGNMGEMGFPGPTG
AKGTPGQSGRSGGPVVQEHQGSLAKGEPVPWLGSPGLRGPKGEPGQSGFPGQNGIKGTSG
TPGLPGFPGGPGAKGDPGLPGFQGSSGIPGPKGLDGIPGNPGLSGPPGRPGENGRAGSPG
FPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPGAKGDLGTPGSSGSPGFPGQ
KGEMGFPGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGRGGPPGSEGPRGPVGSGGTK
GEKGISGIPGSPGFPGAKGEFGTPGFPGNSGLPGTKGLKGDLGLPGVPGFPGPKGDSGIP
GSSGLPGEPGDAGTXGPPGDPGFAPAPIVLKGERGSPGPSGLPGGRGATGPPGLEGLSGQ
PGQPGDPGPEGPPGFSGASGRKGDPGPAGQPGERGYPGPPGSDGLQGPPGPSGSASVAHG
FLITRHSQGEDVPICPEGTGLIYDGYSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFC
NINNVCNFASRNDYSYWPVSYTHLDVYKRQRYNRRLXFDHVXVCVFNHSSMCVCFRCAVC
EAPAMVIAVHSQTIQIPTCPNYWEPLWIGYSFIMHTSAGAEGSGQALASPGSCLEEFRSA
PFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVSRCVVCMKRT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgttggagtcgtacgtggccacgcagtcgtgggcctgtccatggctgtgcggc
ggatcaaagtgtgactgcagcggagataaaaggaggcaaggcgagaggggtttcccagga
ctacagggtcagccaggcgtaccagggttccccggacctgaggggccaatcggaggcagg
ggagagaagggtagtgacggactttcagggccatccggtccaaaaggaattaggggacct
cctggactgcccggattcccaggaacaccaggaattccaggtctcccaggacaggacggg
cccccgggcccaagaggaactgcaggctgcaacgggactaagggcgagagaggattccct
ggaagtccagggttccccggactggagggccgatcgggtccacctggtctgccgggacaa
aagggagacccaggtgatgtcatctcaaatgaccgctttggacagaaaggaggtgtaggt
ttacctggcttgcctggagttcccggtagcccaggccttgcaggattgtcaggccctgtc
ggtccacctggccccagaggttatgagggtcgttctgggcctcctggtcctcccggtcct
aagggtaacatgggattgaacttccaaggtcccaaaggagataagggggatccaggtctg
ctggggcctcccggtccaccaggacaggtcggggagcagaagagacccacagagttagag
atccagagaggagagaaaggtgatcaaggtttacctggtccagctggtgatcctggttat
cctggtccccctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagca
ggcaaycgcggcaaaccggggaaagatggcgacccaggtcctgctggattccctggtagt
aaaggagactcaggcggcccaggtctgccaggtcgggacggtgacaggggggacaaaggt
gaccgtggataccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtg
gggccaaaaggagagcctggtttccccgggtcatcaggaaggaaaggagacacaggacaa
cctggtctctcaggtcctccaggccaaccaggaaccccaggtaatggaggtgtaggccaa
cccggttccccaggcttcccaggagagaggggccagaagggagacgagggccagccaggc
atctcccgccctgggcccccaggacgaaatgggtcccctgggcttcagggaccaccaggc
cctcccggggtcgcaggggtctccacagggggcggtaactgtttaggaggggcccccggt
ttaccaggacaacaaggagacagagggtttcaaggagagtccggacagaaaggtgacaag
ggagaaacctgtgtaaactgtttctcacgtgggaattccatcaccggggcaccaggccct
cccggacctcctgggttcccaggtggaccaggaggaccaggggctaaaggtgacagagga
tatccaggtggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacct
ggtttcccaggagagaagggtgacccaggtgaggctattgctgtggatggggggaggggc
gacaagggagacacagggttccctggaccctctggcctgcctggtctggacggaggacct
ggtcgcaatggagttcctggagctcctggacccaaaggaacatctggttctctgttagtg
aagggtgagcgagggcctccaggtgagcccggtctgcagggtataccaggtgacaggggt
gtccccggatccccaggcttcggccctcaggggccatctggagagaagggtgttcagggc
gtctcagggagaacgggaacacctggagcaccaggcaccaaaggggagccgggccaaacg
atagcagagaagggactcccaggacccaggggacaggatggagaccccggtcttcctgga
aacccaggcaaccccggcgggccaggacagcccggtttccccggcttaccaggtgccaag
ggcgaccccggcctctccggcattggactgccaggaccccccggcgctaaaggattccca
ggctcatctggtgtgccaggtggtcccggaggtccaggaagaccaggagtggacggcctc
cccggtgagccaggtggacctggagctaagggagagccaggattcgggttgccaggtccc
cagggccctccaggcttccctggacccaaaggattagctggacccaaaggagactccggt
ttccccggcaaccccggctcgcccggacgttccggcttcgacggtggccctggtgccaaa
ggtgactctggtatccctggtatatccggagcccgtggccctccaggttcaccctccatc
ggctctcagggcatccccggccccattggacccccaggacccatgggctctccaggatac
tcaggcgccaacggagagaagggagaccccggttctcccggcctggacattccagggttg
ccaggcgacagaggaagtcccggtttccccggcaaccccgggggagttggaccacagggt
aaccctggtggccctggccgagacggacttcctggcctgcctggtggtaaaggagacatg
ggtgtgatgggaactcctggacctctgggatcccctgggaaccccggagcccccggcttc
cctggacctaaaggtgacgatggtttcccagggcgaccaggtgggcccggcggttcaggt
ttgaagggagacaggggagagcccggtatcgcgggactcccaggacccagcattcctccc
caggaactgaagggtggcaagggagaaccaggagcaccaggtttgggaggactgccaggt
caaaagggtatccctggtctccctggagacgctggtataccaggacaggacggacgacct
gggttgccaggacctcaaggtcccaaaggagatgcaggtatccctggaggatcaggctca
ccaggaggcccaggagctaaaggcaacatgggagagatgggcttcccaggacccacaggg
gcgaaaggaactccgggtcaatcaggtcggtcgggtggacccgtagttcaggagcatcag
ggttccctggctaagggagagcccgtcccctggcttggttccccaggactacgaggtccc
aagggtgagcccggtcagtcaggattccccgggcaaaacggaataaaaggaacttccgga
acaccaggtcttccagggtttcctggcggtcccggcgccaaaggtgaccccggcctccca
ggattccaaggttcttccgggattcccgggcctaagggtctggatggtatccccggtaac
cccggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctggg
ttcccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaa
ggagacccaggtcttcctggtttcggtggccccggttctcctggtctcccaggattacca
ggtgctaagggggatcttggcacccctggttcttccggtagccctggcttccctggtcag
aagggagagatgggtttccctggcctgcctgggtcccctggcagcgttgggccacctggc
gccccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctgga
agaggaggtcctcctggctctgaaggtccccgtggccctgtcggcagcggtgggaccaaa
ggtgagaagggaatttccggaattcctggatcgcctggtttccccggagcgaagggagaa
tttggaacgcccggattcccgggtaattctggccttcctggtaccaaagggttgaaggga
gacctcggactgcctggagttcccggattcccaggaccaaagggagattctggaatccct
ggatcatctggtctccctggagaacccggagatgctggcactyctggacccccaggtgac
ccaggttttgctccagcccccatcgtgctgaagggagagcgtggctcccctggcccttca
ggtctaccaggcggccgtggcgccacaggaccccccggactggagggactctcaggtcag
cccggtcagccaggagaccccggtcctgagggacccccaggattcagtggagcctccggs
cgcaagggagacccaggacccgccggacagccaggtgagcgtggatatcccggtccccct
ggttcagatggcctgcagggccccccaggtccatctggatctgcctctgtggcgcacggc
ttcctgatcaccagacacagtcagggcgaggacgtccccatctgcccagagggcaccggc
ctcatctacgacggctactctctgctctacgtacagggcaacgagagggcacacggacag
gacctgggaactgctggaagttgcctgcgtcggttcagcaccatgccattcatgttctgt
aacatcaacaacgtgtgtaacttcgcctcccgtaacgactactcctattggcctgtctct
tatacacatctagatgtgtataagagacagagatacaataggagactgtgatttgatcat
gtctgagtgtgtgtatttaaccactcctctatgtgtgtgtgttttaggtgtgcagtgtgt
gaggcccctgccatggtgatcgctgtacacagtcagaccattcagatccccacctgcccc
aactactgggaaccactgtggatcggatactccttcattatgcacactagtgctggtgct
gagggttcgggtcaggctctggcctctccrggctcctgtctagaggaattccggagcgct
cccttcatcgagtgccacggtcgggggacctgcaactactacggcaactcctacagcttc
tggctggccaccgtcgaccaatcagaaatgttcaggaagccacagtcggagacgctgaaa
gcaggtaacctgcggacgcgcgtcagccgctgtgtggtctgtatgaagaggacgtaa
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