Salvelinus sp. IW2-2015 (Arctic char): 111956547
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Entry
111956547 CDS
T05762
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111956547
03015 mRNA surveillance pathway
111956547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111956547
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111956547
5.6.2.5 RNA 5'-3' helicase
111956547
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111956547
mRNA cycle factors
Common to processing body (P body) and stress granule
111956547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
111956547
NCBI-ProteinID:
XP_023832790
LinkDB
All DBs
Position
LG32:11007405..11018314
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDSVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLTNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AVNPGGRFMSTAMYDAREALIPGSVYDRSSTARTSNMYFQTHDQIGMIGPGPMASLNIPI
PFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGARGGRQRSRGMASHGGGNGQHGHM
SGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVAL
SQDSTYQGERAYQHGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacaccgaggaa
gccgacttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccagactcagagtcagttggacaaccaggtgaatgggcct
gatggagttctgcagaatggggaagactctgttgtaaaagcaagtcaactccttgcagag
ttgaactttgaagaagacgaggaggacacctattatactaaagacctcccagtgcatgca
tgcagttactgtggcattcacgatccggcatgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgcggcaatacgtctggcagtcacattgtgaaccacctggtcaga
gcaaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctggggttcatccccgccaaggcagac
tctgtggtggtattgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcggagcaggagcagcttcgggcccgccagatcaccgcccagcagatc
aataagctggaggagctctggaaggaaaaccccacggccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaagccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atttgcctgaggtacaagggagatcttgccccactctggaagggtattggacatgtcatc
aaagtcccagacaactatggcgacgagatagccatcgagctgaggagcagtgctggggct
cctgtggaagtaccacataacttccaggttgactttgtgtggaagtccacctcttttgac
aggatgcagagcgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagacc
gtgctgcagcgtcctctcagtctcatccagggcccccctggcacggggaaaacggtcacc
tctgccactgtagtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacatcgcggtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactactcacaaatgctgatgtgatctgctgtacctgtgtgggagcaggg
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgagtgcatggtgcctgtcatactgggggccaaacagctgattctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggcagccaaagcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccagccctcagtgccttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaaacccatgttcttctatgtgacccagggccaggaggaaatcgcaagctccgga
acctcctatctaaacaggactgaggcttccaacgtggagaagatcaccaccaggctgctc
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tatctggtgcagtacatgcagttcagtggctctctccacaccaagctctaccaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccacgacgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccgtcaaccctgggggccgtttcatgagcacagccatgtatgatgccagggaagctctt
attcctggatctgtgtatgaccgcagcagcactgcacgtacatccaacatgtacttccag
acccacgaccagattggcatgattggcccaggccccatggcctctttgaacatccccatc
cccttcaacctggtcatgccccccatgcccccgccaggctacctgggccaggtcaacggc
ccccaagcaggccgtggcggaggtatgaagggtaaggcgggcggaggggcacgaggcggg
cgccagaggagtcgtggtatggcgagccatggcgggggcaacgggcagcacggccacatg
agtggcagccaggccagccaggacctgggctcccagcccttctcccagggacccctgacc
cagggctacatcaccatgagccagccctcccagatgagccagcctggcctgtcccagcct
gaactctcccaggacagctaccttggcgatgagttcaagtcccagattgacgtggccctc
tcccaagactccacctaccagggtgaacgagcctatcaacatggtgtgactggactgtcc
cagtactag
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integrated database retrieval system
