Salvelinus sp. IW2-2015 (Arctic char): 111956612
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Entry
111956612 CDS
T05762
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
111956612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111956612
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111956612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
HTH_Hrp3
RcpB
Motif
Other DBs
NCBI-GeneID:
111956612
NCBI-ProteinID:
XP_023832875
LinkDB
All DBs
Position
LG32:complement(32019680..32047407)
Genome browser
AA seq
2603 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDALPDDAFTDPVEEALKLALGQVDPPSEPTPDLSSPAXSIPVA
APTIPDPVPVQQLAPVPVALPQTVSIATTVPQTTLSVASNTSGAATVLLGSSLTVNSSTG
TTQHITTQQFTTQQLTQIAQQLTPQQLAAITQQAGGQGGAKIVILKGPGGQAQVLQTVAG
TGSQAGKVTFARVLSGTQLRPGMQILSGGTVLNQASPXQGQVKVGTGVQRLVQSPNGPLK
QVQLISIPQGQSQSQTQTVQVQIPQAQLAQAQVQLQTQGQATQIQLQPQTQVQLQSAMQT
QVTAAATGTTTVRPQGVTLTTVPQQGEAKRITLVLQQPQGGAAQGGAVTVGGSGQLQQGQ
QQRLVLGNLPGKLVLQGGQLAALTQARAGQMGAQPKVLTIQLQVQQQPNQQGGPKFQLVS
GGQGSSPQVVQISQGQGGQRLAVPLKLLLQPQTNATSTAGRAVSVVKVINTSAAGSAPST
TTMSSPGIRLAKAQEPVRRLETLCKQEKANRIVAEAIARAKARGERNIPRVLNQDELPAG
QKAADQGAAATTTGTPGAKKKGGGSKKKSPAAAAGKGGAGAEKKGKAKAAGGAAGGTLGG
AAGTGCSKSKSKAKINTITLVGGKKRKRNASSDHSDGELSPASPSKALDEDMLAKRRSNR
QVKRKKYTEDLDIKITDDEDEPEEDVDVTTTTAAVASITGGGTGQLMGEQLKQELQLDGD
SLSSMQFFVENPNEEDAAIVDKVLSVRLTKKEVSPGHYINAEEFFVKYKNYSYMHCEWAT
LEQLERDKRIHQKLKRFKAKHAQMRLLLQEEEEPFNPDYVEVDRILDESNSVDNGEPVVY
YLVKWCSLPYEDATWELREDVDEGKVEEFRKIQDRQPQLKRTPRPQAAAWKKLEEFREYK
SGNVLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSISLLSEVFGAGVQGPFLVIA
PLSTITNWEREFATWTDMNAIVYHGSLASRQMIQQYEMYCKDDKDHLIPGAYKFDALITT
FEMILSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEE
LFSLLHFLEPAQFSSESEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQE
TIIEVELTDVQKKYYRAILERNFSFLSMGATSNSNVPNLLNTMMELRKCCNHPYLITGAE
EKIVAELRDVYDPVAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDIL
EDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCV
IFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM
SGNKESNVNGQIQQFSKKEIEDLLRKGAYAAIMDEEDEGSKFCEEDIDQILQRRATTITI
ESEGKGSTFSKASFVATENRTDIALDDPEFWQKWAKRADIDFDSMNRKNTLVIDTPRVRK
QTRQFATLRGEGGEISDPDSDDEYPPANSRQSRSARRSERHTGNGYGRTDCFRVEKHLLV
YGWGRWRDILSHARCKRRLGERDVETICRVILVFCLLHYRGDENIKSFIWELITPPENGR
EPHTLLNHSGLSIPVPRGRKGKRVKAQSSFDVQKVEWIRKYNPDSLLLDDSYRKHLKHQC
NKVLLRVRMLYYLRQEVIGEHADSVLRGADARDIDIWMPEMEQLEVPSGWWDTEADRSLL
VGVFKHGYEMYTTMRADDCLCFLERAGRPDDQAIDAEQHSADAELGDGGDDDKYSEDPEF
KPALRHTKDLYEEADSLNMDDDICVEDKAGPVKTKGPPSGQSGACEWPTSSSLTARLRRL
ITAYQRSYRREQLKVEAAEKGDRRRRRCEQASKLKEIARQERQQRYQLLPSTINSASICV
LKLRWTRREECDFYRVVSTFGVERIKKEADAPEGEEAELEWARFRTFARLEKKTDESLSR
YFRCFMAMCRRVCNLRPARGEDPSELGQSLAPITEERASRTLYRISLLRRLREHVLPHPS
LEELLLLAPPSSELPAWWSTPAHDRELMLGSTLHGVSRTELSVFLDPQFSFSQARHDYLE
NQQNQPAPATPLLQPQAEEGSVVKDEEGLDKESRILGASEALGHSNTQITPLSRPDGKGR
ARPGLGWKKSRGREPRSGGSKGERSVGGISDSDSDSDSGSSTSSQRSGSSDDSGDSDTER
ERAALKMEEDGENSLLSMTLSQDGAPPESLTDPFRVDWPKDRVLINRLDSLCTLVLSGQW
PTGRRYASDAQLNPGSDDLGAGDELSFARLMRKGNNTPGGEGADGQESEFTVKLLKEEGL
KLTFSKHALMSNGSGGEGSGRRKRRDQELSDPDGAVPVVDAMTGTVLSGERAPRRRDLPN
WLKENPDYEVEGDMLELLVNRKKRRRKKRTEKTAALSGSETVKVIDMRTGKKVGAAYGPM
LQDLREFLEENPDCAVAPEWAEMVQSSGFLPDSLFHRLLSARSVIPKRVRRRRHHHHHHA
PQPAPLEDPVLGGGEETLVSDGAYMMEDEDLENSPFLTQAFDVKMEGGDSLSQGGYESSD
REALLDNVIMAQKDSDSSSSSED
NT seq
7812 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccatcatggacctctttgatgacacgccactgtttaacctggatgccctg
ccagacgatgccttcacagaccctgtggaggaggctctgaaactggctctggggcaggtg
gaccccccctccgaaccaaccccagacctctcctccccagcgcmcagcataccagtggca
gctccaaccatcccagacccagtacctgtgcagcagctggccccagtcccggttgccctc
cctcagactgtttcaatagctacaacagtacctcagacaacactctctgtagccagtaac
accagtggggctgccacagtcctgctgggctcgtctctgactgtcaatagctctactggc
accacgcaacacatcaccacacaacaattcaccacacagcagcttacacagatcgcacag
cagcttactcctcagcagctagctgccatcacccagcaggccggaggccagggaggtgcc
aagatcgtcatcctgaaaggacccggggggcaagcacaggtgctgcagactgttgctggg
acaggctcccaagcggggaaggtcacctttgccagggtactgtctggaacccaactcagg
cctggcatgcagatactgtctggaggaacggtcctgaaccaagcgtctcctgsgcaggga
caggtaaaggtgggaactggggtacagagactggttcagtcgcccaacggacccctgaag
caggtacagttgatctccattcctcagggccagtcccaaagccagactcagactgtccag
gtgcagataccgcaagcccagcttgcccaggctcaagtgcagctccagacccaaggacag
gcaacgcaaatccagctacagccccagacacaggtgcagctgcagtctgccatgcagaca
caggtcaccgctgctgctacaggcaccactacagtccgaccacaaggggtcacccttact
acagtaccacaacagggtgaagccaagaggatcaccctggtgctgcagcagcctcagggg
ggtgcggcccaggggggtgctgtgacagtcggtgggtcgggtcagctgcagcagggccag
cagcagaggctggtgttgggtaatctcccagggaagctggtcctccaggggggtcagcta
gctgctctcacccaggcaagggcagggcagatgggggcacagcctaaagtgctcaccatc
cagctgcaagtgcagcagcaacccaaccaacaggggggacccaagtttcagctggtgtcc
ggagggcaaggaagtagcccacaggttgttcagatctcccagggccaaggtggacagaga
ctagccgtgccgctcaaactgctgctgcaaccacagacaaatgccacctcgacggcaggc
agagctgtctccgtagtgaaggtcatcaacacctcagctgccggctccgccccttccacc
accactatgtcgtcaccagggatacggctagccaaggcccaggagcctgtacgtcgtttg
gagaccctgtgcaaacaggagaaggccaaccgtattgtggctgaggccattgccagggcc
aaggcccggggagagaggaacattccacgagtcctcaaccaggatgaactgcctgccgga
caaaaggctgctgaccaaggggccgctgcaacaaccactggcacacctggagccaagaag
aagggaggagggagtaagaagaagagcccagcggcggcagcagggaagggcggggctggt
gcagaaaagaaaggcaaagccaaggcagcaggtggggctgctggtgggacacttggaggg
gcggctggaaccggctgcagcaagagcaaaagcaaggcaaagatcaatacaatcactcta
gtggggggtaagaagaggaagaggaatgcctcctcagaccactctgatggggagttgagc
cccgcctctccctctaaggccctggatgaggacatgcttgcgaagaggcgttctaaccgt
caggtgaagaggaagaaatacactgaggatctggacatcaaaatcactgacgacgaggac
gaaccggaggaggacgtggacgtaaccaccacgacggcggcggtggcgtccattaccgga
ggaggaacggggcagctgatgggagagcagctcaaacaggagctgcagttggacggggac
agcctttccagcatgcagttctttgtggaaaaccccaacgaggaagatgcagcaattgtt
gacaaagttttgtccgtgaggttaactaaaaaggaggtgtctccaggacattacatcaat
gctgaggaattttttgtcaaatataagaactactcctacatgcactgtgagtgggccact
ctggagcagctggagagagacaagaggatccatcagaagctcaagagattcaaggccaaa
catgcacagatgagactcctcttacaggaggaagaggagcccttcaacccagattatgtg
gaggtggaccggatcctggatgagtccaacagtgtggacaatggagagccggtggtgtat
tacctggtgaagtggtgctctctgccctatgaagatgctacctgggagctaagagaggat
gtggacgagggcaaggtggaggagttcaggaagatccaagaccgccaacctcaactcaag
agaacgccccggccccaagcagctgcatggaagaagctggaggaattcagagagtacaag
agtgggaacgtactccgagaataccagctagaaggagtcaactggctgctcttcaactgg
tacaacaggcagaactgtatcctggcagatgagatgggtctagggaagaccatccagtcc
atctctctgctgtccgaggtgtttggtgccggggtccagggccccttcctggtcatcgct
cctctctctaccatcaccaactgggagagggagtttgccacctggactgacatgaacgcc
atcgtctaccacggcagcctggccagcaggcagatgatccagcagtacgagatgtactgc
aaggatgacaaggatcatctgatcccaggggcgtataagtttgatgccctgatcaccacg
tttgagatgattctgtccgactgccctgagctaagggagatctcctggcgctgtgtgatc
attgacgaggctcaccgcctcaagaaccgcaactgcaagctgctggacagtctcaagatg
ctggacttggagcataaggtgcttctaactggtacccccctccagaacacagtggaggaa
ctcttcagtctgctgcacttcctggagccagctcagttttcatcagagtctgaattcctt
cgtgactttggagacctcaaaacagaggagcaggtccagaagctccaggccattctgaag
cctatgatgctgcgcagactcaaagaggacgtagagaagaacttggcgccaaaacaggag
accatcattgaggtggagctgacagatgtgcagaagaaatactaccgggccatcctagag
aggaacttcagtttcctcagcatgggagccaccagcaacagcaacgttcccaatctgctc
aacaccatgatggagctacgcaagtgctgcaaccacccctaccttattaccggggcagag
gagaagattgtggctgagctgagggatgtttacgaccccgtggccccagactttcacctg
caggcgctggtgagatccgcaggcaagctggtcctgctggacaaactgctgcctcgcctg
aaggccgggggacacaaggtgctcatcttctcccagatggtgcgctgcctggacatcctg
gaggactacctcatcaacaagagatacctgtacgagcgtattgatggcagagtgagaggg
aacctgcgtcaggcagccattgaccgcttcagcaaaccagactcggaccgtttcgtcttc
ctgttgtgtacccgggctggaggtctgggcatcaacctgactgctgctgacacctgcgtc
atctttgactccgactggaaccctcaaaacgacctgcaggctcaggcgcggtgtcaccgt
atcggccagtcgaaggcggtgaaggtctaccgtctgatcaccaggaactcttatgagagg
gagatgctggacaaggccagcctcaaactaggtctggaccgggctgtactgcagagcatg
agcggtaataaggagagcaacgtcaatggacaaatccagcagttctccaagaaggagatt
gaggacctcctgaggaagggtgcgtacgctgccattatggacgaggaggacgagggctcc
aagttctgtgaggaggacattgaccagatcctccagaggagagccaccaccatcaccatc
gagagcgagggcaagggctccaccttctccaaggccagcttcgtggctaccgagaacagg
accgacattgccctggatgaccccgagttctggcagaagtgggccaagagggcagacata
gactttgattccatgaataggaagaacaccctggtgattgacacgcccagggtgaggaag
cagacccgtcagtttgccaccctgaggggcgagggtggggagatatctgaccccgatagc
gacgatgagtacccgcccgccaattcccggcagtcccggtccgctaggcgctccgagcgc
cacaccggaaacggctacggccgcaccgactgcttccgtgtggagaaacatctgcttgtt
tacgggtgggggcgctggagggacatcctgtctcatgcacgctgtaagcggcgcctcggg
gagcgagacgtggagaccatctgcagggtcatcctggtcttctgcctgctgcattaccgt
ggagacgagaacattaagagcttcatctgggagctcatcaccccgccggagaacggccgg
gaaccccacacactcctcaaccactctggtttgtccatccctgttcctcggggcaggaag
gggaagagggtgaaggctcagagctcctttgatgttcagaaggtggagtggatccgcaag
tacaaccccgactccctgcttctggacgacagctaccgcaaacatctcaagcaccagtgc
aacaaggtgttgctgagagtacgtatgctctactacctgagacaggaagtcattggagaa
catgctgattctgtgctgagaggagctgatgccagggatattgacatctggatgcctgag
atggagcagcttgaggtgccatcaggttggtgggatacagaggcagaccgctccctcctc
gtcggagttttcaaacatgggtatgagatgtacaccactatgcgtgccgacgactgtctc
tgtttcctggagagagctggtcgccctgacgaccaggccattgatgctgagcagcactct
gcagacgcagagctgggagacggaggagacgatgacaagtattctgaagacccggagttc
aagcctgcgttaaggcacaccaaagacctatacgaggaggccgactccttgaacatggat
gatgatatctgtgtcgaggacaaggcagggcctgttaaaaccaaggggccgccctctggc
cagtccggagcctgtgagtggccgaccagctcatcacttaccgcgcggctccggcgtctg
atcacggcataccagcgcagctacaggagagagcagctgaaggtggaggcagcagagaag
ggcgaccgcaggcgcaggaggtgtgagcaggccagtaaactgaaggagattgcacgccag
gaacgccaacagaggtaccaactactaccctcaactattaactctgcaagcatatgtgtc
ctgaaactgaggtggacccgtagagaggagtgtgacttctaccgtgtggtgtccacgttt
ggtgtggagcggataaagaaagaggcagatgccccagagggggaagaggctgaactggaa
tgggctcgcttccggacatttgcccgtctagaaaagaagactgacgagagtctgagccgt
tacttccgctgcttcatggctatgtgccggagggtgtgcaacctgcggcccgcccgcgga
gaagacccttcagagctgggccagtctctggccccaatcactgaggagcgggcctctcgc
accctgtaccgcatcagcctgctgcgccgtctccgtgagcacgtcctgcctcacccttcc
ctggaggagctcctcctgctggccccgcccagctccgagctgcctgcctggtggagcact
ccagcccatgaccgggagctcatgctgggttccaccctccacggcgtcagccgcactgag
ctctcggtcttcctcgacccgcagttctcattcagccaggcccgccacgactacctcgag
aaccagcagaaccagcccgcccccgccactcccctcctccaaccacaggcagaggagggc
tcagtcgtcaaagacgaggagggtctggacaaggagtcccgcatccttggagcctctgag
gctctcggccactcaaatacccagatcacacccctctcccgtcccgatgggaagggccga
gcccggcccggcttgggatggaagaagagcagggggagagagccgagaagtggaggaagt
aaaggagaaagaagtgtaggagggatttccgattccgattcggactctgattctggctcg
tctacctcctcccagcgatcaggcagctctgacgacagtggtgacagtgacacagagagg
gaaagagctgctttgaagatggaggaagatggtgagaacagcttgctctcaatgactcta
tctcaagatggcgcgccaccagagtcccttaccgaccccttcagggttgattggcccaag
gaccgtgtgttgataaaccgtctggacagcctctgtaccctggtgctgtctgggcagtgg
ccaacagggcggcgctatgcctctgacgcccagctcaacccaggctctgacgacctaggg
gcaggggatgagctcagctttgcacggctcatgcggaaaggcaacaacacgcccggtgga
gaaggagcagacggacaggaatctgagttcaccgtcaaactcctgaaggaggaggggctg
aagctgaccttctctaagcatgccttgatgtccaatgggtcagggggagaggggagcgga
cgcaggaagcgtagggaccaagaattgtcagatccagacggagcagtcccggtggtcgat
gccatgacgggcacagtgctgagtggggagcgagcccctcgccgcagagacctgcccaac
tggctgaaagagaacccagactatgaggtggagggagacatgttggagctccttgtgaac
cggaagaagaggaggaggaagaagaggactgagaagaccgcagcactgtcgggcagtgag
acggttaaggtcattgatatgaggacaggaaagaaggttggggctgcgtatggacctatg
ctgcaggatctgagggagtttctggaggagaaccctgactgtgcagtggcaccagaatgg
gctgagatggtccagagctctggctttctgccagacagcctcttccaccggctcctctct
gcacgctctgtcatccccaagagagtccgccgccgccgccaccaccaccaccaccatgct
cctcagcctgccccgctggaggacccagtcctgggcggaggtgaagagaccctggtctca
gacggggcctacatgatggaggacgaagacttggagaattcccctttcctgactcaagct
tttgatgttaagatggaaggcggtgacagcttgtcacaagggggatacgagagttctgac
agggaggcccttttggacaacgtcatcatggctcagaaggactcagactcttcctccagc
tcagaggattga
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integrated database retrieval system
