Salvelinus sp. IW2-2015 (Arctic char): 111956826
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Entry
111956826 CDS
T05762
Name
(RefSeq) short transient receptor potential channel 4-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111956826
Ion channels [BR:
salp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111956826
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank
Ank_4
Ank_3
Ank_5
YVC1_C
Egg_lysin
BAR_4
PKD_channel
Motif
Other DBs
NCBI-GeneID:
111956826
NCBI-ProteinID:
XP_023833256
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Position
LG4p:6078437..6137143
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AA seq
926 aa
AA seq
DB search
MSQLYYRRTDNSSYRDRIPLRIVRAESELSGLEKNYLGAVEKGDYASVKQALEEAEIYFR
ININCIDPLGRTALLIAIENENLEIIELLLTYNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSVPQPHEVRCNCME
CVSSSDVDSLRHSRSRLNIYKALASPSLLALSSEDPFLTAFQLSWELQELSKVENEFMSE
YEELSQQCKQFAKDLLDQTRSSRELELILNYRDDINPLLDENTNDLARLKLAIKYTQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAGKFLTCVFIGLLFPLFSLCYLVSPKSRYGHFIR
KPFIKFICHTTSYLTFLFLLLLASQHIVSTDPNRQGPTPTVVEWMILPWVLGFIWTEIKQ
MWDGGFQDYIHDWWNLMDFVMNALYLATISLKIVAYVKYSGFRARNEWQMWHPTLVAEAV
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YETDEGLKGCKGIRCETQNNAFSTLFETLQSLFWSVFGLISLYVTNVEADHQFTEFVGAT
MFGTYNVISLVVLXXXXXAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGGTLPSPFNI
IPSPKSIWYFICWIRKHIFKITRAKKTETFGTIGRRAAINVRINHQYQEVLRNLVKRYVA
AMIRDAKTEEGLTEENFKELKQDISSFRYEVLGMMKGKVGPGGGGMAIAGSKPSEGEGAS
SLVYPDHSFKYSPKFPPATLKTNMFHVTTSMLQQRAAPSSTSSSTSPSTSQGLNRLVNGS
VVPSWTSTDTSSITTSSTSISSPSSTPSIKDGLARKDICDFELYSVSEEMGEADLEELDC
DGEKEEQGGARERTCTEKEENEERGE
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaactgtactaccggaggacagacaactcctcctatagggaccggatccctctg
cggattgtcagggccgagtctgaactgtctggcctggagaagaactacctgggagcagtg
gagaaaggagactacgcctcagtcaaacaggctctagaggaagcagagatatacttccgg
atcaacattaactgtatagacccgttgggccgcacagctctgctgatcgctatagagaat
gagaacctggagattatagagctgctgctcacctataacgtgtacgtcggtgacgctctc
ctacacgccatccgtaaagaggtggtgggggccgtggaactgctgctcaaccacaagaag
cccagcggggagaaacaggttcctcccatcctattggacaagcagttctctgacttcact
cctgacatcacacccatcatcctagcagctcacaccaacaactatgagatcatcaaactg
ctggtgcagaagggggtgtctgtgccccagccacatgaggtgcgctgtaactgcatggag
tgcgtgtccagctctgatgtggatagtcttcgtcactcccgctcacgtctcaacatctac
aaggccctggccagcccatcactactggctctctccagtgaagaccctttcctcacagct
ttccagctctcctgggaactacaagaactcagcaaggtggagaatgagtttatgtcggag
tatgaggagctatctcagcagtgtaaacagtttgccaaggacctgttggaccaaaccagg
agctccagagaactagagctgatcctgaactacagagacgacattaaccctctactggat
gagaacaccaatgacctggccagactcaaactggctatcaaatacacacagaaagagttt
gtagcccagcccaactgtcagcagctgcttgcgtctcgttggtacgatgagttccctgga
tggaggcgtcgtcactgggcagggaagttcctaacctgtgtcttcatcggcctcctcttc
cccctcttctccctctgctacctggtatctcctaagagccgctatggacacttcatcagg
aagcccttcatcaagtttatctgccacacaacgtcctatctcaccttcctgttcctgctg
ctgctggcctcccagcacatcgtctctacagaccctaacagacaggggccgactcctact
gtggtggaatggatgatactgccctgggtactgggcttcatctggacagagattaaacag
atgtgggatggagggttccaggactatatccatgactggtggaacctcatggactttgtt
atgaacgctctgtacctggctaccatttctctgaagatcgttgcctatgtcaagtacagt
ggcttcagggccaggaacgaatggcagatgtggcatcctaccttggtagcagaggctgtg
tttgccatcgctaacatcttcagctccctccgcctcatctctctgtttacagctaactcc
cacctgggacctctacagatctctctgggcaggatgctgctygacatccttaagttcctg
tttatctactgcctggtgctcctggccttcgctaacgggctcaaccagctctacttctac
tacgagacagacgagggactgaagggatgcaagggcatccgctgcgaaacacagaacaac
gctttctcaacgttgtttgagacactccagtctttgttctggtctgtctttgggttgatc
agtctgtatgtgaccaacgtggaggcagaccaccagttcacagagtttgtaggggccacc
atgttcggaacctataacgtcatctctctggtggttctnnnnnnnnnnnnnnnngccatg
atgaacaactcctaccaacacatcgctgatcatgcagacattgagtggaagtttgcaaga
accaagttgtggatgagttactttgaagagggagggactctgccttctccattcaacatc
atccctagccccaagtcaatctggtacttcatctgctggatcaggaaacacatcttcaag
atcaccagggccaagaaaacagaaacatttggaaccatagggagacgggctgctataaac
gtaagaataaaccaccagtatcaggaggttttgaggaacctggtgaagagatatgtagca
gccatgatcagagatgccaagacagaggaaggattgactgaggagaactttaaggagctg
aagcaggacatctccagctttaggtatgaggtcctagggatgatgaaggggaaggtgggg
cctgggggtgggggcatggctatagcaggaagtaaacccagtgaaggggaaggggcctcc
agtctggtctaccctgaccactccttcaagtactcccccaagttccccccggccacgctt
aagaccaacatgtttcacgtcaccacatccatgctccagcagagggcagccccttcctcc
acctcctcgtccacatccccttccacctctcagggcttgaaccgactggtcaacggctct
gtggtaccctcttggacctccactgacacctcctccatcaccacctcttccacttccatc
tcctctccctcctccactccctccatcaaagacggactggccaggaaagacatctgtgac
tttgagctctactctgtgtctgaggagatgggggaggctgacctggaggagctggactgt
gatggagagaaggaggagcagggtggagcgagggagaggacgtgtacagagaaggaagaa
aacgaagagaggggagagtga
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