Salvelinus sp. IW2-2015 (Arctic char): 111956837
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Entry
111956837 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-N-like
KO
K06252
tenascin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111956837
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111956837
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111956837
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111956837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fibrinogen_C
fn3
EGF_2
EGF_Tenascin
Pur_ac_phosph_N
Interfer-bind
NDNF
hEGF
Motif
Other DBs
NCBI-GeneID:
111956837
NCBI-ProteinID:
XP_023833268
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All DBs
Position
LG32:complement(19944835..19973227)
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AA seq
940 aa
AA seq
DB search
MTTRLHWLTRALCLISILCTVTSTYVTEDYSSPAEKEVTFSHVYKIDLSKSPECKLALQT
PPSQQDQFSGLQELEGGATLEGENNIVFRHQINLKTPKCDCDESESFTSLLYRVNGLEEE
VEHLKSQCSQGCCGGAGGVDTSCSGHGTYQHNTCSCQCNPSWEGPDCSISTCPDKCNDNG
RCVDGKCVCHAGYTGSDCSQLMCPGACNDKGHCVDGKCVCFSHFTGEDCSEQKCDPDCIH
GTCVNGMCICDEGFFGEDCSTVLGPNGLRLVRVTDNSLLVEWEAVKAAEYYILTWHPEGN
EAELERVTVPNTETSYLITGLSPGVTYIVQVYAVIKEIQSEGDRIEATTEVSGIDGIRVL
GQTEDSIQVDWQNPAXPLDHFRLTYANPDGQEEEQNVPMSAEARTTQTIVGLQPGTEYLI
RVQGIKGTIEGKAAFATGVTDLDGPTNLLTKEVTEDTATVEWQKVQAEIDXYMISYSSAE
GSSGEIPVGADSTSYRLTGLKPGVLYTVYIWAVKGSRVSRKSSTEAETELDFPTNLLTRE
VTEDTVTVTWDKVQAEIDSYMISYSSAEGSSGEIPVGADSTSYRLTGLRPGVLXPVYIWA
VKGSRVSRKSFVDAETEIDAPKNLKASDVKLNVATLTWTAPLARIDGYILTLRAEDGSLK
AVEKNLRAGESSFAMSGLEKGKNYIVTLLAYRGPKRSRVIEITFKTVGVLYPFPMDCTQI
KKNGNVASGIYTVYVNSERTKPMEVYCDMDTDGGGWVVFQRRNNGQMDFMKRWRQYMAGF
GNMTDEFWLGLDNIYELTNTPTQYELRVDLGVGSEKAYAVYDNFKIAPAKQKFKLTIGEY
SGTAGDAMNYHQGRPFSTVDNDNDIALGNCALTHRGAWWYKNCHLANLNGKFGDNRHSMG
VNWEPWKGHLMSLDFTEMKIRPVGTTRKRRSLSSRTAPRK
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaccactagacttcactggctcacaagagccctatgcctgataagcatactgtgcact
gtcacttccacatatgtgacagaagattattcatcccccgctgagaaagaagtcaccttc
agccaygtctataagattgacctgtccaagagccctgagtgtaaactcgccttgcagacc
cccccttcccaacaggaccagttttcaggcctgcaagagctggaagggggcgctactctg
gagggggaaaacaacatagttttcaggcaccaaatcaacctcaagaccccaaagtgtgac
tgtgatgagtcggagagctttacgtctctgctgtacagagtcaacgggctggaggaggag
gtggaacacctgaagagtcagtgctcccagggctgctgtggtggagcaggaggtgtggac
actagctgtagtggccacgggacctaccagcacaacacctgcagttgtcaatgcaaccct
agctgggagggtccagactgctccatttccacctgtcctgataagtgcaacgacaacggc
cgctgtgtggatggcaagtgtgtctgccacgctggctacacggggagtgactgcagccag
ctgatgtgcccaggggcctgcaacgataagggacactgcgtggacggcaagtgtgtttgc
ttcagccacttcactggcgaggactgcagcgaacagaaatgcgatcctgactgcatccac
ggcacctgcgtgaacggaatgtgtatctgtgacgaaggcttctttggtgaagactgctct
acagtgttgggccctaacggcctgcgtctggtaagggtgactgataattctctgctggtg
gaatgggaggctgtgaaagcagcagagtactacatcctgacctggcaccctgagggcaat
gaggcagagctggagcgggtcaccgtgcccaacacagagacctcctacctgatcacagga
ctcagcccaggtgtcacctacatagtgcaggtgtacgctgtcatcaaggagatccagagt
gagggggacaggatagaggcgaccacagaggtgtctggtattgatggtatccgggtattg
ggccagactgaggactctatccaggtggactggcagaaccctgcarcacctctagaccac
ttcagactgacctatgctaaccctgacgggcaggaggaggagcagaacgtaccaatgagt
gcagaggccaggaccacccaaaccatcgtaggactgcaacctggcactgagtacctcatc
agagtgcaaggcatcaaagggaccatcgaagggaaagccgccttcgccaccggggtcaca
gatcttgacggtcctactaacctcttgaccaaagaagtgacagaggataccgctaccgtg
gaatggcagaaggtacaagcagagatcgacgrctacatgatcagctacagctctgctgag
ggctccagtggggagatccctgttggggcagacagcacctcctacaggctgactgggctg
aagcctggagtcctctacacagtctacatttgggctgtcaagggctcccgggtcagcagg
aagagctccacagaagctgagacagaactagattttcctactaacctgttgaccagagaa
gtgacagaagacacagtgacagtaacatgggataaagtccaggctgaaatcgacagctac
atgatcagctacagctctgctgagggctccagtggggagatccctgttggggcagacagc
acctcctacaggctgactgggctgaggcctggagtccttnnaccagtctacatctgggct
gtcaagggctcccgggtcagcaggaagagcttcgttgacgctgagacagaaattgacgca
ccaaaaaacctgaaagcatcggatgttaaactgaatgtagctaccctgacctggactgct
ccmttagccagaattgatggctacatcctcacattgagagctgaggatggcagtttgaag
gctgtggagaagaatctgagggcaggagagagcagctttgccatgtcgggcctggagaaa
ggaaagaactacattgttaccctccttgcttacagaggaccaaagaggagcagagtgata
gagatcacattcaaaacagtgggtgtgttgtacccattccccatggactgtactcagatt
aagaagaatggtaacgtggcaagtggaatctacaccgtttacgtcaacagtgaacgtacc
aagcccatggaggtgtactgtgacatggacactgatggcggtggatgggtggtgttccag
agacgcaacaatggacagatggacttcatgaagcgctggagacaatacatggctggtttt
gggaacatgactgatgagttctggctcggtctggacaatatctatgagctgaccaatact
cccacgcagtacgagctgcgagtggaccttggtgtgggttcagagaaggcctatgctgtc
tatgacaacttcaagatagccccggctaagcagaagttcaagctgaccatcggtgaatac
agtggaacagcaggcgatgccatgaactaccatcaaggtcgccccttctccacggttgac
aatgacaatgacattgctcttggtaactgtgccctgacacatcgtggtgcatggtggtac
aaaaactgtcaccttgccaacctcaacggmaaattcggagacaacagacacagcatgggt
gtgaactgggagccatggaagggtcacctgatgtctcttgatttcactgagatgaagatt
cggcctgttggcactaccaggaagaggaggtcgcttagcagcagaacagctcccagaaaa
tag
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