Salvelinus sp. IW2-2015 (Arctic char): 111956838
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Entry
111956838 CDS
T05762
Name
(RefSeq) tenascin-N-like
KO
K06252
tenascin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111956838
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111956838
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111956838
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111956838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fibrinogen_C
fn3
EGF_2
EGF_Tenascin
Pur_ac_phosph_N
Interfer-bind
NDNF
hEGF
fn3_2
Motif
Other DBs
NCBI-GeneID:
111956838
NCBI-ProteinID:
XP_023833270
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All DBs
Position
LG32:complement(20212104..20246857)
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AA seq
942 aa
AA seq
DB search
MTTRLHWLSRALCLIGILCTVTTTYVTEDSPAPAEKGVTFSHIYKIDLAKSPDCKLALQT
MPHQQDQESGLQELEGGPTLEGDKDIVFRHQINLKTPKCDCDESERFKSLLYRVNGLEEE
VEHLKSQCSQGCCGGKGGGAGGVDTSCSGHGTYQHDTCSCQCNPGWEGPDCSISTCPDEC
NDHGRCVDGKCVCLAGYMGRDCSQMMCPGDCNDKGHCVDGKCVCFSHFTGEDCSEQKCSP
DCVHGTCVNGMCICDEGFFGDECSAVFGPNGLRLVRVTDVSLLVEWQAVRAAEYYVLTWH
PEGNEAERVTVPNTETSYLITGLRPGVTYIVQVYAVIKEIQSEGDRIEATTVVSGIDGIR
VLGQTEDSIQVDWQNPAAPLDHFRLTHANPDGQEEEQIVPMSAEARTTNTIVGLQPGTEY
LITVQGIKGTIEGKASFVTGVTDLDAPANLLTREVTEDTTTVTWEKVQAEIDGYVISYSS
VEGSSGEIPVGADSSSYRLTGLRPGVIYTVYIWAVKGSRVSRKSSIVAETDLDAPTNLLT
REVTEDAADVSWDRPLADIDGYVISYSSAEGSMGRIPVGADSSSYRLTGLRPGVIYTVYI
WAVKGSRVSRKSSTPAETEIDSPKNLKVSDVKLDAATLTWTAPLARIDGYILTFRAEDGT
LKTSEKKLRAGESRFAMSGLEMGKNYIVTLLAYRGAKRSRVIETTFKTVGLLYPFPMDCT
QIKTNGNMASGIYTIYINSDRTKPMEVYCDMDTDGGGWVVLQRRNNGQMDFMKRWRQYMA
GFGNMTDEFWLGLDNIYELTNTPTQYELRVDLGVGSEKAYAVYDNFKIAPAKQKFKLTIG
KYRGTAGDAMNYHQGRPFSTVDNDNDIALGNCALTHRGAWWYKNCHLANLNGKFGDNRHS
MGVNWEPWKGHLMSLDFTEMKIRPVGANRKRRSLSSRIAPRK
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgactactagacttcactggctctcaagagccctctgcctgataggcatactgtgcacc
gtcactaccacatatgtgacagaagattctccagcccccgctgagaaaggagtcaccttc
agccacatctataagatagacctggccaagagccctgactgtaaattggccttgcagacc
atgcctcaccagcaggaccaggaatcaggtctgcaagagctggaggggggccctactctg
gagggggacaaggacatagtcttcaggcaccaaatcaacctcaagaccccaaagtgtgac
tgtgatgagtcagagcgcttcaagtctttgctgtacagagtcaacgggctggaggaggag
gtggaacacctgaagagtcagtgctcccagggctgctgtggtggcaaaggtggtggagca
ggaggtgtggacactagctgtagtggccacgggacctaccagcacgacacctgcagctgc
caatgtaaccctggctgggaaggcccagactgctccatctccacctgtcctgatgagtgc
aacgaccacgggcgctgtgtggatggcaagtgtgtgtgccttgctggctacatggggaga
gactgcagccagatgatgtgcccaggcgactgcaatgataagggacactgcgtggacggg
aagtgtgtgtgcttcagccacttcaccggcgaagactgcagcgaacagaaatgcagtcct
gactgcgtccacggcacctgcgtgaatggaatgtgtatctgtgacgagggcttctttggg
gatgaatgctctgcagtgtttggccctaacggcctgcgtctggtcagggtgactgatgtc
tcgctgctggtagagtggcaggcggtgagagcagcagagtactacgtcttgacctggcac
cccgagggcaacgaggcagagcgggtcaccgttcccaacacagagacctcctacctgatc
accggtcttaggccgggggtcacctacatagtgcaggtgtacgctgtcatcaaggagatc
cagagcgagggggacaggatagaggcgaccacagtggtgtctggtattgatggtatccgg
gtattgggccagactgaggactctatccaggtggactggcagaaccctgcagcacctctg
gaccacttcagactgacccatgctaaccctgacgggcaggaggaggagcagatcgtacct
atgagtgcagaggccaggaccaccaacaccatcgtaggactgcaacctggcactgagtac
ctcatcacagtacaaggcatcaaaggcaccatcgaggggaaagcctccttcgtcaccggg
gtcacagatctggatgctcctgctaacctgttgaccagagaagtgacagaggacacaacg
acagtaacatgggaaaaagtccaggctgaaatcgacggctatgtgatcagctacagctct
gttgagggctccagtggggagatccctgtgggggcagacagcagctcctacaggctgact
gggctgaggcctggagtcatctacacagtctacatctgggctgtcaagggctcccgggtc
agcaggaagagctccattgtagctgagacagatctggatgctcctactaacctcttgacc
agagaagtgaccgaggacgcagccgatgtgtcgtgggacagacctctagcggacatcgac
ggctacgtgatcagctacagctctgctgagggctccatggggaggatccctgtgggggca
gacagcagctcctacaggctgactgggctgaggccgggagtcatctacacagtctacatc
tgggctgtcaagggctcccgggtcagcaggaagagctccacaccagctgagacagaaatt
gattcgcctaagaacctaaaagtgtcagatgttaagctggatgctgcgaccctgacctgg
actgctcccttagccagaatcgatggctacatcctcacattcagagctgaggatggcaca
ttgaagacttcggagaagaagctgagggcaggagagagcaggtttgccatgtcaggcctg
gagatgggaaagaactatattgttaccctcctcgcttacagaggagcaaagaggagcaga
gtgatagagaccacattcaaaacagtgggtttattgtacccgttccccatggactgtact
cagattaagacgaatggtaacatggcaagtggaatctacacgatttatatcaacagtgat
cgcaccaagcccatggaagtgtactgtgacatggacactgatggcggtggatgggtggtg
ttacaaagacgcaacaatggacagatggacttcatgaagcgctggagacaatacatggcc
ggctttgggaacatgactgatgagttctggctcggtctggacaatatatatgagctgacc
aatactcctacccagtatgagctgcgagtggacctgggtgtgggttcagagaaggcctat
gctgtctatgacaacttcaagatagctccagcaaagcagaagttcaagctgaccatcggc
aaatacagaggaacagcaggtgatgccatgaactaccatcaaggtcgccctttctctact
gttgacaatgacaatgacattgctctcggtaactgcgcacttactcatcgtggtgcttgg
tggtacaagaactgtcaccttgccaacctgaacggcaaattcggagacaacagacacagc
atgggtgtgaactgggagccatggaaaggccacctgatgtctcttgatttcactgagatg
aagatccggccagtgggcgccaacaggaagaggaggtcgcttagcagcagaatagctcct
agaaaatag
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