Salvelinus sp. IW2-2015 (Arctic char): 111957344
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Entry
111957344 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 1-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111957344
Transcription factors [BR:
salp03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
111957344
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
HLH
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
111957344
NCBI-ProteinID:
XP_023833893
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Position
LG4p:16820265..16861868
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AA seq
748 aa
AA seq
DB search
MATMPFISEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKVRRSCHSLA
TDMFEQHLGAHLLQVELTGSSVFDYIHPADHVEMAERLGIRPHLRAEAGCHVAPESASSS
ASTSSLAGTPEPAPSSPLSPGNEPPDRGFFIRMKSTLTKRGLHVKSSGYKVIHVTGRIRC
RPAMVPGSARSVRRPMGLVALAHTLPPSTLNEVRMESQMFVFRVNMDLQVTYCENRISEY
MDLSPAEVVGHTCYHFIHVEDLDNIRQSHEDLLRKGQVVTGYYRWLQRRGGYLWVQSCAT
VSINHKAPHERNVIWVNYVISRTELPDTPLDLLQLPESLRVERLKASSSPSEHSPQTQGP
QPMKSSVCKGDPDSKLREIYNPGVQSGDRRKRPLRSDSEGAPAETRRRLEEFRQRERSVS
ASSDLGSESGGEEREWEHGGDSARVKREEGPSKRGEETPMRGGGAHNGRAVIQHLKSVVS
SPLSGHPNIKTEHEALAAGGRWTHTHTSSHIQPPPSHTHTPCGSLNGDSPLTPIPDSSSS
SEAPPNGIFTPPSPAMSPPMSGSSPLPCEERGMLSGGRGCGPDFELLHRLAAGGAAGRVL
FHPLALGPQGPQSLYAPSTIRYAPPELPHSHPGAEGLRSDHHKGPPAFFPHLQRLAGLPS
FSGFSASDNPFNPFCMNGLRGAAGSEED
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcatcagcgagggaaagtgcgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccttgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctgcctctccccggggccatcaccagccagctggacaaggcctcggtcatccgt
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggagagaaccactgcagcaaagtgcgacgctcctgccactctctggcc
actgacatgttcgaacagcacctgggagcacacctgttacaggtggagttgacgggcagc
agtgtgtttgactacatccacccagcggaccatgtggagatggcagagcgtctgggcatc
aggccccacctgagggccgaggctggctgccacgtggcccccgagagcgcttccagctct
gcctccacatcctccctggcagggacccctgagcctgccccctcaagccccctctctcct
gggaacgaacctcctgaccgaggcttcttcatccgtatgaagtccaccctcaccaagaga
ggcctccacgtcaagtcctccggctacaaggtgatccatgtgaccgggcgaatccgctgt
cgccctgccatggtgccaggctckgcccgctcggtgcgtcggccaatgggcttggtggcc
cttgcgcacacgctcccgccctccacgctgaacgaggtgcgcatggagagccagatgttt
gtcttccgggtcaacatggatttgcaggtcacctactgcgagaacaggatctcagagtac
atggacctgagcccggcagaggtggtgggacacacctgctaccacttcatccatgtagaa
gacctggataacatcagacagagccatgaggacttgttgaggaagggtcaggtggtgacc
gggtactaccgctggctccagaggagagggggttatctgtgggtccagtcctgtgccacc
gtctccatcaaccacaaagccccccacgaacgcaacgtcatctgggtcaactacgtcatc
agtcggacagagctcccagacactcccctggatctgctgcagctcccagagagtctgagg
gtggagcgtctgaaagccagctcctccccttcggaacactcaccacaaacccagggccca
cagccaatgaaaagctctgtgtgtaaaggtgaccctgactctaaactgagagagatctat
aatcccggtgtccaatcaggggacaggaggaagcgtccgctgcggtctgactctgagggt
gctcccgcggaaacgcggcgtcgcctggaagagttccgccagagagagcggagtgtgtcc
gcctcctcagacctgggcagcgagagcgggggagaggagagagagtgggagcatggggga
gacagcgcgagggtcaaacgagaggaggggccttcgaaacgaggcgaggagacccccatg
aggggcggcggggcgcacaacggccgtgcggtaatccagcacctgaagagtgtagtgtcc
tcgcctctctctggccaccccaacatcaagactgaacatgaggcactggccgcagggggt
cgctggacacacacccacacctcctcacacatacaacctcccccctcacacacacacaca
ccctgcggcagcctgaacggcgacagtcccctcacccccatcccggactcctcctccagc
agtgaagccccacccaatggtattttcaccccgccctcccccgccatgtcccctccgatg
tccggctcctcccctctaccctgtgaggagcggggaatgttgtctggaggccgagggtgc
gggcctgactttgagctgttgcatagactggcagcggggggtgctgcaggacgggtgctg
tttcaccccctggccctcggcccccaggggccacagagcctgtacgcccccagtaccatc
cgctatgcgcccccagagctgccccactcccaccccggtgctgaggggctgcgctccgac
caccacaagggccccccagcctttttccctcacctccagaggctggctggcctgccctcc
ttcagtgggttctctgcctcggacaatcccttcaaccccttctgtatgaacggactgagg
ggggccgcagggtccgaggaggactga
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