KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111957520
Entry
111957520         CDS       T05762                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03030  DNA replication
salp03410  Base excision repair
salp03420  Nucleotide excision repair
salp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111957520
   03410 Base excision repair
    111957520
   03420 Nucleotide excision repair
    111957520
   03430 Mismatch repair
    111957520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:salp03032]
    111957520
   03036 Chromosome and associated proteins [BR:salp03036]
    111957520
   03400 DNA repair and recombination proteins [BR:salp03400]
    111957520
DNA replication proteins [BR:salp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111957520
  DNA Replication Termination Factors
   ELG1-RFC complex
    111957520
Chromosome and associated proteins [BR:salp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111957520
DNA repair and recombination proteins [BR:salp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111957520
  Check point factors
   HRAD17(Rad24)-RFC complex
    111957520
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_14 AAA_22 AAA_24 RuvB_N AAA_16 AAA_assoc_2 ResIII DEAD DUF815 AAA_5 ATPase_2 PhoH AAA_7 AAA_30 TIP49 AAA_19 AAA_2 Mg_chelatase DNAX_ATPase_lid Thioredoxin_6
Other DBs
NCBI-GeneID: 111957520
NCBI-ProteinID: XP_023834133
LinkDB
Position
LG33:36802779..36810498
AA seq 335 aa
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcatcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccgcatctcttgttctatggacccccaggcacagggaaa
acatctactgttctagcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatactggacgag
gctgatgccatgacccgggatgcccagaatgcattgcggcgagtcattgagaagtacaca
gagaacaccaggttctgtttgatttgtaactacctgtctaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggacccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctatcatcaggagacatgagaagatccctcaacatactgcagagcaccagcatggcg
tatgggaaggtcaccgaggataatgtgtacacctgcactggtcacccactacgatccgat
atcgccaacatcctggactggtccctaaacaaggacttcacttccgcttacaaccagatt
ctccagctgaagacgctgaaaggcctagccctgcatgacatcctgactgaagtccaccta
ctgatccacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtaccggctggcctctggaactagtgagaagatccaattgagttcgatggtg
gcggctttccaggcagtgagagacatcgtggtcaatgaggccgcctag

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