Salvelinus sp. IW2-2015 (Arctic char): 111957563
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Entry
111957563 CDS
T05762
Name
(RefSeq) tenascin-like
KO
K06252
tenascin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111957563
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111957563
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111957563
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111957563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
Pur_ac_phosph_N
NDNF
EGF
fn3_2
GldM_4th
Glyco_hydro_66
Motif
Other DBs
NCBI-GeneID:
111957563
NCBI-ProteinID:
XP_023834191
LinkDB
All DBs
Position
LG33:30009377..30080139
Genome browser
AA seq
1607 aa
AA seq
DB search
MVMKGLLLGCVTVAVLLQLSSAGLVKKIIRHRRETLRDPSKNLTLPHPDQPVVFNHVYNI
NVPSSSLCSVDMESPGGTKVKPKRSPVQSDMQGTENKDHTMDGENQIVFTHRINIPKQAC
GCDNHMPDMKDIFSRLEMLESELSSLREQCGSGASCCGAQVTGEVATKPYCNGRGNFSTE
TCSCVCEPGWKGPNCTEPECPNFCQDQGRCVDGKCVCFEGFHGDDCSMEPCQEDCGDNGD
CIDAMCICEDGFTGNDCSQTNCLNNCLGRGRCVDDECVCDEPWTGYDCSELICPNDCYDR
GRCVNGTCFCEEGFTGDDCGELTCPSNCNNRGMCVDGQCVCHSGYSGEDCSKLTCPNDCT
EKGHCFNGRCICDPGFEGVDCSILSCPDNCSNRGQCVNGECVCNVGFEGDDCSEISCPMT
CLNRGRCLNGQCVCSKGFXGDDCSXKTCPKDCLGRGECVDGTCVCFIGFTSKDCSELTCP
NNCLNRGHCVNGQCVCNKGFAGEDCSEKTCPNNCLERGYCVDGTCVCFDGFQGLDCSVLT
CPGDCEDQGRCMDGVCLCNEGFIGEDCSGVSPPKDLAVQEVTPETVDLSWANEMQVAEYL
VTYVPTALGGLELDMRVPGDQKNATISELEPGVEYLISVFAVLSNKRSVPVSARVATHLP
EPEGLKFTSVRETAVEVQWDPLDIAFDGWNLIYRKTKEENGEILNSLGSPDTMFEQSGLG
PGQEYEVKLEVVKNNTSGPAARKSVFTSVPDLDAPRDLQTVELTDDSITLEWKNSQAQVD
NYRIKYGPLSGGDHGELLFPTGPLDTTQAKITGLRAGTEYGMGVTAVKSERESLPTTTNA
VTALDAPKNLEVESSSETEMVLVWQKPVAKIDKYKLEYVSADGRRAEVTPFSRDVKYTMR
NLTPGMLYTITLTAERGHRQSGPTTISATTEEEKPVLGKLTVSDVSWDSFLVSWVTEEGD
FDGFVVEVTDAEAGVDWQNHTLQDAAQSLGIVGLSPATWYNVSLYGLFKGALLGPVYADT
ITEAEPIVEHLLVSDITPDSCKVAWLAEEDLFDSFVIVINDTSDDLASPQEVVVPGEERT
TVLTELIDDTEYEIELYGVISGRHSDSISGVAKTGLGTPKGIHFSDVTDTSAIVHWTIPR
ARVDSYHVTYVPAQGGAPQTVTVGGTESQKVLSNLTPGVTYQVTVISVKGQKKSEPGTSS
VATALDKPSGLTVVNINDTDALLHWQPSIATVDGYVITYSADTVVPVMERVSGNIVEFEI
TSLTPATHYTVKVYAMRAAAKSASTTTEFTTDVDAPQDLAASNIQTENAMLTWKXPRADI
TGYILSFESADGTIREVVLSPTATSYNMAQLSASTEYSVRLLAIAGPKRSRVITTVFTTI
GVLYKHPRDCSQALLNGDTASGVYTIYLGGDESQPIQVYCDMDTDGGGWIVFLRRQSGKL
EFFRNWRNYTAGFGDMNDEFWLGLSNLHKITVVGQYELRVDLRDKGDVAHAQYDKFSISD
PRSRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDNDIAVTNCALSYKGAFWYKNCHRVNL
MGRYGDDSHSKGVNWFHWKGHEHSIEFAEMKIRPSNFRNSEGRRKRS
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgaaaggcctgctcctaggctgtgtgaccgtggctgtgctgcttcaactctcc
agcgccggcctggtcaagaagatcatccgccaccgcagagagaccctgagagatccctct
aagaacctgaccctgccccaccctgaccagccagtggtcttcaaccacgtctacaacata
aacgtcccctccagctccctgtgttccgtagacatggagagcccaggaggaaccaaggtc
aagcctaaacgaagtccagtccagtcggacatgcagggcacggagaacaaggaccacacg
atggacggagagaaccagatcgtgttcacccaccgcatcaacatccccaagcaggcatgt
ggctgtgacaaccacatgcctgatatgaaggacatctttagcagattggagatgctggag
tctgagctgtccagcctcagagaacagtgtggcagtggagccagttgctgtggagcccag
gttacaggtgaggtggccaccaagccttactgtaacggccgtggtaacttcagcactgaa
acctgcagctgtgtgtgtgagcccggctggaagggacccaactgcaccgagcctgagtgc
cccaacttctgccargaccagggacgctgcgtcgatggcaagtgtgtctgcttcgagggc
ttccacggagacgactgcagcatggagccatgtcaggaggactgtggggacaacggggac
tgcatcgacgccatgtgtatctgtgaggacggcttcaccgggaacgactgctcccagacc
aactgcctgaacaactgcctgggacgcggccgttgtgtagacgatgagtgtgtgtgtgac
gagccgtggacgggctacgactgctccgagctcatctgtcccaacgactgctacgaccgc
ggccgctgcgtcaacggaacctgcttctgtgaggagggctttaccggggatgactgtggg
gaactcacctgccccagcaactgtaacaaccgtgggatgtgtgtcgacggccaatgtgtg
tgtcactctggctacagcggcgaagactgctccaagctcacctgccccaacgattgtact
gagaaaggccattgcttcaacgggaggtgcatctgcgacccaggcttcgagggagtggac
tgttccatcctgtcttgcccagacaactgcagcaacagaggccagtgtgtcaatggagag
tgtgtctgcaatgtaggattcgagggtgatgactgctctgaaatctcctgccccatgacg
tgtctgaaccgaggccgctgtttgaatggacagtgtgtgtgcagtaaaggcttcrccggg
gacgactgcagcrtcaagacctgccccaaagactgcctgggacgcggcgagtgtgttgac
ggcacgtgcgtgtgcttcattggcttcacaagcaaagactgcagcgagctgacttgtccc
aacaactgtcttaaccgtgggcactgtgttaacggccagtgtgtgtgcaacaaaggcttt
gctggggaggactgcagtgagaagacatgtcccaacaactgcctggagaggggctattgc
gtagacgggacgtgtgtgtgcttcgatggattccagggcctggactgctctgtgctgacc
tgtccaggagactgcgaggaccaggggagatgtatggatggagtgtgtctgtgtaacgaa
ggtttcatcggagaggactgctctggggtgtctccacccaaggacctggcagtgcaggag
gtcaccccagagacagtggacttgtcatgggctaacgagatgcaggtggcagagtacctg
gtcacatatgtgcccactgcccttggaggcctggagctggacatgcgtgtgcctggggat
cagaagaacgccaccatcagtgagctggagcctggtgtggagtatctgatcagtgtcttc
gctgtcctcagcaacaagaggagtgtccctgtcagtgccagagtggcaacacatctccct
gagcccgagggactcaagttcacatcagtgagagagactgcagtagaggttcagtgggac
cccctggacatcgcctttgatggctggaatctcatctatagaaaaactaaagaggagaat
ggggagattctgaactccctgggcagccctgacaccatgttcgagcagtctgggctggga
cctggtcaggagtacgaggtcaaactggaggtggtgaagaacaacaccagcggacctgca
gcacgcaagagcgttttcacaagtgttccagacctggatgccccgcgggacctgcagacg
gtagagctgactgacgacagcattactctggagtggaagaacagccaggctcaagtagac
aactaccgcatcaaatatggccccctctctggaggagaccatggagagctgctgttccct
accggacccctggacaccacccaggccaagatcactggcctgagagctgggacagagtat
gggatgggagtgacagccgtgaagagtgagcgtgagagccttcctaccaccaccaatgct
gttacagcgttggatgctcctaagaacctggaggtggagtcttcctctgagactgagatg
gtgctggtgtggcagaagccggtggctaagattgacaagtacaagctggagtacgtgtca
gccgatgggcgaagggctgaggtgacacccttctctagagacgtcaagtacaccatgagg
aacttgacgcccggcatgttgtacaccatcaccctgactgctgagaggggacacaggcag
agtggccccaccaccatctccgcaacaacagaggaggagaagcctgtgctgggcaaactg
acagtgtcagacgtgtcgtgggacagcttcctggtgtcctgggtcactgaggagggagac
tttgatggctttgtggttgaggtgacagacgcagaggcaggggtagattggcagaaccac
accctccaagatgcggcccagagcctgggcatcgtaggcctctctcccgccacctggtac
aatgtcagcctgtatgggctgttcaagggggccctgttagggcctgtctatgcagacacc
atcacagaagctgaacccatcgtggagcatctcttggtctccgacatcaccccagacagc
tgtaaagtggcctggttggctgaagaggacctctttgayagttttgtcattgtgatcaat
gatactagcgacgacctcgcttctccacaagaggtggtcgtgcccggcgaggagagaaca
acagtgcttactgagctaattgacgacacagagtacgaaattgagctgtatggggtaatt
tctggacggcactcagactctatctccggggtggcaaaaacagggctgggcacacccaag
ggcatccatttctctgatgtcactgatacctctgcmattgtacactggacaatccccaga
gctcgagtggacagctaccatgtcacctatgtccctgctcagggaggtgctcctcagact
gtgacagtgggtggcactgagtctcagaaggtgttgtcgaatctgacccctggagtgacc
taccaggtgaccgtcatctctgtgaagggacagaagaagagtgagcctggcaccagcagc
gtcgccacagctctggacaagcccagtggcctgactgtagtcaacatcaatgacacagat
gctctgctccactggcagccttccatcgccacwgtagacggatatgtcatcacctacagc
gcagacactgttgtcccagtgatggagagagtgtctggaaacattgtggagtttgagatt
acctccttgacccctgccacccactacactgtcaaggtctacgccatgagagcggctgct
aagagcgcctccaccaccactgagttcaccactgatgtagatgcccctcaggacctggca
gccagtaacatccagacagagaacgccatgttgacctggaaggmcccacgcgctgacatc
accggctacatcctcagctttgagtcagctgacggcacaatccgggaggttgtcctgagc
cccacagccacttcctacaacatggcccagctgagtgcctccactgagtactccgtcaga
ctgctggccatcgcagggcccaagaggagcagagtcatcaccaccgtcttcaccaccatt
ggcgtactgtacaaacaccccagggactgctcccaggccttgctgaatggagacacagcc
tctggtgtctacaccatctacctgggtggagatgagagtcagcccatacaggtctactgt
gacatggacacggatggaggtggatggattgtgtttctcagacgccagagtggtaagctg
gagttcttccgcaactggaggaactacactgctggcttcggtgacatgaacgacgagttc
tggctcggcctgtcgaacctccataagatcactgtagtgggacagtacgagcttcgtgtg
gacctcagagacaagggggatgtagcccacgcccagtacgacaagttctccatctctgat
ccccgcagtcgctacaaggtmcatgttggagggtacagtggtaccgcaggtgattctatg
acctaccatcatggtcgcccgttctcaacctacgaccatgacaatgacattgcagtcacc
aactgtgccctgtcctacaagggtgccttctggtataagaactgccatcgcgtcaacctt
atgggacgatatggcgatgacagtcacagcaagggagtgaactggttccattggaaaggc
catgagcactccattgagtttgctgagatgaagatcaggccatccaacttcaggaactct
gagggaaggagaaaacgatcgtaa
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