Salvelinus sp. IW2-2015 (Arctic char): 111957566
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Entry
111957566 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 1-like
KO
K06225
patched 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
111957566
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
DcrB
Motif
Other DBs
NCBI-GeneID:
111957566
NCBI-ProteinID:
XP_023834194
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All DBs
Position
LG33:30527382..30614943
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AA seq
1466 aa
AA seq
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MHRTASTEHHITEQHNTEQHSTAQNSTVQAHHSTEQHRTGQEVREDLPPRTWPCVGGQRG
PGPVLEVRETGSRDLACVGGQRGPGPVLEVREDLALRGPGPVLEVREDLACVGGQRGPGP
VLEVREDLALCWRSERTVACVEESERTWPSEDLALCWREDLALCWRSERTWLKDWPCVGG
QRGPGPVLEVREDLALCWRSGEDLALCWRSERTWPCVGGQRGPGPQRTWPCVGVREDLAL
GDLALVEVREDLALYWRSERTLPQRTWPCVGGQRGPGPVLEFGNRCSSVADVFSLLCVCS
AQALQTMFQLMTPKQMFEHLKGYEEVSHINWNEDKAAAILEAWQRKYSEAVKQSVAANSS
QKVLTFTTTTLEDILKSFSDVSIIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLL
VALSVAAGLGLCSLLGISFNAATTQVAHTHDRTGECLKRTGASVALTSISNVTAFFMAAL
IPIPALRXFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDIFCCFYSPCANRVIQ
IEPQVHMDGADSSRYSPPAPSYHTTPPTYSSSPPSYSSHGFSQQTQITMQSTVQLRTEYD
PRTQAFYTTAEPRSQISVQPFTPTPVATGPANNPNTSHASHGNNSHHSNHLSRSGSSSGH
VNLNNNNGSRGSGSVPSPPQLSSGVPTVSPQAGEGVCVSGESASSTRDLLSQFGGASLGL
RCLEPHCSRWTLASFAEKHYAPFLLQPTTKVVVILLFLALLVVSLYGTTRVRDGLELTDI
VPRETSEYDFIGAQFKFFSFYNMYVVTQRAEYSQAQPLLYQLHHSFNTVRYVLREDDGQL
PRMWLHYFRDWLQALQEAFDQDWEAGWITQSSYRNGSDDGVLAYKLLVQTGRRERPISVN
QLTRQRLVDADGIINPVAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDRTDSMLETR
LSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICSNYSRQGLPSYPNGYPFLFWEQ
YVGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVLVLSLMTVELFGMMGLIGIKLSA
VPVVILIASVGIGVEFTVHVALAFLTAIGDRNRRAVLALEHMFAPVLDGAFSTLLGVLML
AGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSYFGPYPEVTPVDGCSQLPTPSPEP
PPHVVHFSVHPCHTTSGTGTGTGSDSSDSEYSSNTTASGISQELQQYDLPTTRGRAGRAE
EVRRGAVPRRTARQGNATAYSLSSSVLPESDAHPGASRRFSKRDLHSLPPARPRMDAFET
ATEAGGHYGSEGHFVSGGHREHSAGHRTRPSHNPRPNHHQPHHSNPAPTYCQPITTVTAS
ASVTIAVHSASPPTQSPTSSYPGHTAADSYHTARGAEPEPAFQHPHVPLEVHTGCRGTKM
DTNVEAMELQDVECEAAESDSDKRAS
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgcacagaacagcaagcacagaacatcacattacagaacagcacaatacagaacagcac
agcacagcacagaacagcacagtacaggcacaccacagtacagaacagcacagaacaggt
caggaggtcagagaggacctgcccccaagaacctggccctgtgttggaggtcagagagga
cctggccctgtgttggaggtcagagagactggctctcgagacctggcctgtgttggaggt
cagagaggacctggccctgtgttggaggttcgagaggacctggctctcagaggacctggc
cctgtgttggaggtcagagaggacctggcctgtgttggaggtcagagaggacctggccct
gtgttggaggtcagagaggacctggccctgtgttggaggtcagagaggaccgtggcctgt
gttgaggagtcagagaggacctggccctcagaggacctggccctgtgttggagagaggac
ctggccctgtgttggaggtcagagaggacctggctcaaggactggccctgtgttggaggt
cagagaggacctggccctgtgttggaggtcagagaggacctggccctgtgttggaggtca
ggagaggacctggccctgtgttggaggtcagagaggacctggccctgtgttggaggtcag
agaggacctggccctcagaggacctggccctgtgttggagtcagagaggacctggccctc
ggagacctggccttggtggaggtcagagaggacctggccctgtattggaggtcagagagg
accttgcctcagaggacctggccctgtgttggaggtcagagaggacctggccctgtgttg
gagtttgggaaccgctgctccagtgtagctgatgtgttttctctgctgtgtgtgtgtagt
gcccaggcgttacagaccatgttccagctgatgactcctaaacagatgtttgagcacctg
aagggttatgaggaggtgtcccatatcaactggaacgaagacaaggctgcagccatactg
gaggcctggcagaggaaatactcagaggcagtaaagcagagtgtagcagccaactcgtct
cagaaagtgctgacgtttaccaccaccactctggaagacatcctcaagtctttctctgat
gtcagcatcatacgagtggccagcggctacctgctcatgttggcctatgcgtgtctgacc
atgctacgctgggactgtgctaagtctcagggagctgtcggactggctggtgtcctcttg
gtggcgctgtctgtggctgcaggcctggggctctgctctctgttgggcatatccttcaac
gctgccaccacacaggtagcacacacacacgaccgtacgggggagtgtttgaagaggaca
ggggctagtgtagctctcacctccatcagtaacgtcactgctttcttcatggcagctctc
atccctatacctgccctacganccttctctctgcaggctgcggtggtggtcgtgtttaac
tttgccatggtgctgctcatcttccctgccatcctcagtatggacctgtatcgcagagag
gaccggcgttttgacattttctgctgcttctacagcccttgcgctaacagggtgatccag
atcgagccccaggtccacatggacggagcggacagcagtcgctacagcccccctgccccc
tcctaccacaccacccctcccacatacagcagctcacccccgtcctacagcagccatggt
ttctcccagcagactcagatcaccatgcagtctacrgtccagctgaggacagagtacgac
cccaggactcaggccttttacactacggccgaacccaggtcccagatctcagtacaaccc
ttcacacccacgcctgtcgccaccggccccgccaacaaccccaacaccagtcacgccagt
cacggaaacaacagccaccacagcaaccatctcagccggagtgggagtagcagtggtcac
gtcaacctcaacaacaacaacggtagccgtggttcaggctcggtcccttctcctccccag
ttgtcctctggcgtccccactgtctccccccaagcgggggagggggtgtgtgtgtcgggg
gagagtgccagctccaccagggatctgctgtcccagtttggaggggcctctctggggctg
cgctgtctggagccccattgctcccggtggaccttggcctcctttgccgagaagcactac
gcccccttcctactgcagcccaccaccaaggtggtggtcatcctgttgttcctggccctg
ctggtagtcagtctgtacgggaccacacgggtgcgggacgggctggagctgaccgacatc
gttcccagggagaccagcgagtacgacttcatcggggcccagttcaagttcttctctttc
tacaacatgtacgtggtgacccagcgggcggagtactcccaggcccagcccctgctctac
cagctgcaccacagcttcaacacggtccgctatgtactgagagaggacgacggacagcta
ccacgcatgtggctccactacttcagggactggctgcaagctctgcaggaagcatttgac
caggactgggaagcaggttggatcacacagagcagctataggaacggttcagatgacggg
gtcctggcctacaaactactggtacagaccggacgcagggaaaggcccatcagcgttaac
cagctgactaggcagcgcttggtggatgcggatggcatcatcaacccagtggcattttac
atctacctgactgcgtgggtcagcaacgacccggtggcgtacgcagcctcgcaggccaac
atacggccccaccccccggagtggctccacgaccgcacagactccatgctcgagacacgc
ctcagcattcctgctgccgagcccatcgaatatgcacagtttccattctacctcaacggg
ctccgcgagaccccccagtttgtggaggccatcgagtcggtgcgagccatctgcagtaac
tacagccgccagggcctacccagctaccccaacggctaccccttcctcttctgggagcag
tacgtaggcctcagacactggctgctgctctccatcagcgtggtgctagcctgcaccttc
ctcgtctgtgccctctttctgctcaacccctggactgccggcatcatcgtcctggtcctg
tctctgatgaccgtggagctgtttggtatgatggggctgatagggatcaagctcagtgct
gttcctgtggtcatcctcatcgcctctgtcggcataggagtagagttcactgtacatgtt
gctctagcgttcctcacagcgataggggaccgtaacagacgggcagtgctggcgttagaa
cacatgttcgctccggttttggacggagccttctctactctactaggagtcctcatgcta
gcaggctctgagtttgacttcatcgtcaggtatttctttgctgtgctggccatcctgacc
attctgggggtgctgaatggtttggtccttctccctgtgttgctgtcttactttggcccc
tatccagaggtgacccctgttgatgggtgtagccagttacccaccccgtccccagagccc
cctcctcacgtggtccacttctccgtccacccctgccacaccacctcagggacggggaca
ggtacaggctctgattcgtcagactctgagtacagctccaacaccacggcatcaggcatc
agccaggagctgcagcagtacgacctccccaccactagaggcagagctgggagagcagag
gaggtgcgacgaggagcagtgccaagaaggacagctagacaaggaaacgccacagcctac
tctttgtcttcttcggtcctgccggagtcggatgcccaccccggtgcatcccgtcgcttc
agcaagagggatctacattcgctgcccccagcccgcccgcgcatggacgcttttgaaact
gctactgaggctggaggccattacggctccgagggccattttgtctcgggaggccaccga
gaacattctgcggggcacagaactcgtccatcccacaacccccggcccaatcaccaccaa
cctcaccactctaaccccgcccctacttactgccagcccatcaccacggtaacggcctct
gcatcggttaccatcgccgtccactctgcctctccccccactcagagccccacctcctct
tacccaggacacactgcagcggacagttaccacacagcaaggggcgcagagcctgagcct
gccttccagcacccccatgtgccactggaggtccatacgggttgcagaggaaccaagatg
gacaccaatgtggaggccatggagctccaggatgtggagtgtgaggcagctgagagcgat
tctgataagagggcaagctga
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