Salvelinus sp. IW2-2015 (Arctic char): 111957899
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Entry
111957899 CDS
T05762
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111957899
Membrane trafficking [BR:
salp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
111957899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Fer4_11
DUF5764
Motif
Other DBs
NCBI-GeneID:
111957899
NCBI-ProteinID:
XP_023834756
LinkDB
All DBs
Position
LG33:complement(9088952..9145577)
Genome browser
AA seq
3264 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKQYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDGGAEAKEVKTGAFDELMTSAEKAKLYTAIDYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSTFFSPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESKPAPRSTNAHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLDIEGLGTELKLRTFDMTSYTFLREICLECPEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLLPPTKEVAPSQEELPTIPEEDEGEGEEGEKKEGSAVAKKTSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSHRIAEIRIEGLVSEVLMRRKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSITLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDMTVVLRTLSGNLSETSDSASPPPP
PRTVDRSDTASTKGSQASGGTGTNPTSGNTVVTAAVVETQKSTKLKSTLKLDFKFDSMTL
VLYSPNGTEVQVLDSRDEQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRCSV
KKITARMMAMRPGAERNVMVEVNYKQGRDGTSLDTVVQDVYLCASMEFLLTVADIFLKAS
QQGFSSATPKNSSSTKPTAAAASKEPAPVGVVAKSEMNVLVKNPEIVFVADLTRADAPAL
VMTTECELVMKSDPDGQLMTAVVKDLKVVACPFLKEKRNNETTVLQPCQVFFKSTQSSTS
PQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDLK
LWFLEEEGKDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDVK
NWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDETRDGFRPWTLGLKMKKKPVKYTGI
SEEVEYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASDSFQKDEAPF
VVKNRLGLTVSVVHSELFSPLGREATARRVELQNGESLNMDYLRTTTHSDQFSAMTSLVA
KDYYIQPTPVGHTSTGMIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSPF
QIINHFSIPFRVMEGTTCLGISLPTEEFCVPLDSYRSELRLQPVTEGDDQYDCSEGFSYE
LVSQQPGARVQQTCHRHGDSAGVLMVNIVPLKDTVTSPHTGMAGEHFDEPYILHLWPSVL
LRNLLPYPITYRLQDSEEPTPITLMDGHSAQLHTAIMDQSSLELRLLDYLGHDWQAHYGL
RGDLDEITFIVFSSLRVEEEVVRLGEGGEGKRAELDIAVHVKYDPGQTEVAIHSPYWMVN
KTGRLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVGS
YGEVKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEAR
PQQAAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSDH
SIIIRFSDYHDGAAPFLIINHTQEQTVEFYQRFRRDSSEWVADELLGLSFSVEETQPSSQ
KEKDKLSPGKAMYYTWAEPTGSRSLAWQCGSYSGELKSEEDLRLDVNEEGKLYLISFYEG
LQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSSRQEVSFIGITSSDV
VWESKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNVILDLENNFQVSLTHNGQDMRM
MQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSV
TMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAVLDLFTPENASV
MTSEQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIKLHLSFSLSSGGEDGNK
EKRETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTRQQLQWEVIRHYSKQ
AIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVG
GAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAINKQPSGLREGLTRGGKGLVSGF
VSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETS
QDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMIT
KRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKERVKSVFHAKEFGKIIN
FRSPEIAKWVLTKLEDARESLHKY
NT seq
9795 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacactggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcagaacaagaaaaccctgcacttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaggatgatgtcaccaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaatgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgcgatgccttcaggacagcatcccg
gggggttccactcccatgaaccacgatttcatttttcgtccgataacggccgatgcgaag
ctgcgcatgaacccccggtcagatgtggacttctcctctcccaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctggggtcagtggatatgatgtcacgcaacctgccctacaggaaataccgtccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgattacaggcatcatggaggtg
gacgtgaagccgcggctgcacatgtggtcgtggcagcacatccgctgccaccggcagaca
gtcaagcagtacagagagctctacaaggccaagatcaccagcaagaagcccactgagaag
cagctcagggagctggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcgggtctgcgtatcttccgtccgggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gacggtggcgccgaggccaaggaggtcaagaccggagcttttgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcgactacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctca
atgaaagacaacaaggaccagaatgaaatccttaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagctcagtctgttt
gaggtgacaggactagccaataaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacccccttgttggacatcctgtttgagaccaaccctctggacgag
agcgctgatcagcggctccgtgtcgagtcccagcctctggagatcatctatgatgctgtg
acggtgaacagcatgtctacgttcttctcgccgcctgatgacctccagctggacgagctg
accaacgccacgctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgta
atcgttccccaaaccggcttctacgactctacccagaacctcatgctgttggacctgggt
cacttcaaggtgtctagtctgagcagagaggggctgccgcagctctctgtggggagaagt
actatagaggacattatgtcccgagcctacgacagcttcgatgtccaactcagcagccta
cagttcctctacagcaaaccagatggggactggaagaaagcccgtaagctgaggcagtcg
gccctccacatcctggagcctgttgatgtcaaggtggtgttcagcagagccatggtggtc
acagattcccgcatgcccaagtttaaaatctccggggagctgcccctcctgtctctgagg
atctctgatgataaggtgcggggcgtgctggagctgatcgacagcatcccgctgccagag
agcaagccggccccgcgcagcaccaacgctcactcaacatccaaggctttaaagcagtcg
tacacccctcagctaacccccaggaaaccaaccatggctgaactgcgcaattccctgata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccgttcttccccgacaacatgcccagccccctgcagcgctccgactcggtcaagagg
agaggtctggtcaagaaagaccctaagaagaacatgaccgagttcctcatgacgtttgag
atcagcaaactgtccgttcagctgtgtcgtctgtctggaggcgaggaggtcacagtgttg
cacctggacattgaggggctgggcaccgagttgaagctacgtaccttcgacatgacatcc
tacacattcctacgagagatctgcctggagtgccccgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtac
actaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctcctccccccgaccaaggaggtggcgcccagccaggaggag
ctgcccaccatccccgaggaggacgagggagagggggaggaaggcgagaagaaagaggga
tcggccgtggcaaaaaaaacttcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatccgagccgatctcaactgtctgaaggttttcatccgaggccagagccacaggata
gcggagatccgcatcgagggcctggtgtcggaggtgctgatgaggagaaaggcggtcgag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggctttgtacaag
cagtgtgtatccatagccgatgaggaggtgtttgctttccgcatggtgaaccacacggaa
gccacggagggcgatgcctatctagacatgggtaaagtggacaccagcatcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgactgtgcaggcagcggagaag
gcggccacgggggtgatggagctggctgagcgcagcacgcgcatctccctggacgtggac
ttcaacgctcctgtcgtcttcctgccgcagtcgtcgtcctccgccaacgtcatcgtggcc
gacctcggtatggtcacggtcaagaaccgcttcgccatggtcccctcccagatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaggaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgacatagag
atcactgctcacctcaaaccaatgaacctgatcctgggtcaggatgatatgacggtggtg
ttgaggactctgagtgggaacctgtcagagacgtcagactctgcttccccccctcctcct
ccgcgtacagtggaccgctccgacacggcctctaccaaaggctcacaggcatcaggaggt
actggtactaaccccaccagcggcaacacagtggtaactgctgcagtggtggagacccag
aagagcaccaagctgaagagcacactgaaacttgacttcaagtttgactccatgacactg
gtcctgtacagccccaatgggactgaggtgcaggtgttggactcgagggatgagcagctg
aagctggctgagttcaccctggggacgatctctacatctgtccacatgttctcagacgga
tctatgaaggcctccgtcaaactcacagactgcctgctagacgacaaaagatgcagtgtc
aagaagatcactgccaggatgatggcgatgcgtccgggcgctgagaggaacgtgatggtg
gaggtgaactacaagcagggccgcgacggcacctctttggacacggtggtgcaggacgtg
tacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaagccagc
cagcagggcttctcctccgccacccccaagaacagcagtagcactaaacccactgcagcc
gcagcctccaaggaacctgctccagtgggggtggtggcaaagtcagagatgaatgttctg
gtgaagaaccccgagatcgtgtttgtggccgacctgacacgtgccgacgccccggccctg
gtcatgaccacggagtgcgagctggtgatgaagagtgacccggatggtcagctgatgacg
gcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaagaggaacaat
gagaccactgtgctgcagccctgccaagtgttcttcaagagcacacagtcctccacctcc
ccgcaggccatggaggtctgcatcaacgcactcaccctcaaggtgtcacccatcattatc
aacacagtgattaccattcagtcggtgctgagcccggctggtgccgagacaccccagtct
gagctggagagccctgtgcccccagacctgtgggagcgccggtcctggagagacctcaag
ctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctggtcccactgatt
ccccaaggcgagtccctgcagttggccatcaactccatctgcctgaccctggaggcaggg
gtgggccaccgcaccgtccccatgctcctggccaagtcctccttccacggtgacgtcaag
aactggagcaccctcatcaacctgcacagccagcttaacctggaggttcactacttcaac
gaggtgatgggggtgtgggagccactgctggagcccctagaagacgagacccgagacggc
ttcagaccttggaccctgggattaaagatgaagaagaagccagtgaagtacacaggtata
tcagaagaagtggaatacagcatccctgactacaagaccgtgatcagcatcagcagcaag
gaccaacttaacatcaccctctccaagtgtggactgggcatgcttagtaacctgggcacg
gcctttgcggaggcggccaagcaggcatcggatagtttccagaaggacgaggctccgttc
gtcgtgaagaaccgtctaggtctgactgtgtcggtggtacacagtgaactgttcagcccc
ctgggccgcgaggccacagcgcgccgggtagagctgcagaacggagagagcctcaacatg
gactaccttcgcaccaccacccactcagaccagttctctgccatgacttcgttggtggcc
aaggactactacatacagcccactccggtgggccacacttcaacaggcatgattccgttg
atcaaagtggggcgtggcatgtacagtgtcatgcacaaagactctggggtcacccgtttc
ctggtctgtcagatatactctgtggagggaagcaagtacatcaagatccgctctcccttc
cagatcataaaccacttctccatcccattcagagtgatggagggcaccacctgtctgggg
atatcactgcctacagaggagttctgtgtgcctctggactcttacaggtcagagctaaga
ctgcaaccggtaaccgagggagacgatcagtacgactgctccgagggtttcagctacgag
ttggtgagccagcagcccggtgctcgtgtgcagcagacctgtcatcgccatggtgacagc
gctggcgtcctcatggtcaacatcgtccctctgaaagatactgtgacatcaccacacaca
ggaatggccggggagcactttgacgagccctacatcctgcacctgtggccctccgtcctg
ctccggaaccttctgccttaccccatcacctatcgcctacaggacagtgaagagcccacc
cccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccagtcc
agcctggaactccgcctcctcgactacctggggcacgattggcaggcccactacggtctc
cgtggcgacctggacgagatcaccttcattgtgttcagctccttgcgcgttgaagaggag
gtggtcaggttaggagaggggggagaagggaagagggcggagctggatattgcggtgcat
gtgaagtacgaccctggccagactgaggtggccatccattctccctactggatggtgaac
aagacgggccgcctgctgcaatacaaggctgacgacatccaccgtaaacacgccatggac
tatgacatgcctctgctcttctccttcaagccacacaactttctgcagaacaacaaggtg
cggctgatgatctcggacagcgacctgtcggatgatttctccctggataccgtgggtagt
tatggtgaagtgaagtgcaaagggaggcttaaagattacgtgatcggagtgaagatcgac
gccagcagtttcagcctgacccgtatcgtaagctttgtgccgtactacctgttagtgaac
aggaccaaacatgtaatctgggtgggagaggagggccaggacgactggaccgaggccaga
ccacaacaggcagccatcccgttttggcctgagagggactccaagaagctcaaagtcaaa
gtagaaggcagtcggtcaactcctcaaaccatggacttcaccaaaccggaaaactgcctg
ctgctgcacctggacaacacgctgggcggggtcattgtggatgtgaacctatcagaccac
tcgattatcatccgtttctctgactaccacgacggggccgcccccttcctcatcatcaac
cacacccaggagcagacggtggagttctaccagagatttcggagagattcatcagaatgg
gtggcagacgagctgctcggcctctccttctcagtagaggagacccagcccagtagtcag
aaggagaaggacaagctaagccccgggaaggcaatgtactacacctgggctgagcccact
gggtcgcgctccctggcctggcagtgtggcagctacagcggcgagctgaagagcgaagag
gacctgcggttggacgtgaacgaggagggcaagctgtaccttatctcgttctacgagggc
ctccagcgggtggcgctgttcactgaggacagacgcatctacaagctgctgtgtgagagt
gagaaggccgagctggctgaacaggagatcatcctctccctgcaagacgtgggcgtctcc
ctggtcaacaacagtagccgccaggaggtgtccttcatcggtattaccagttcagacgtg
gtgtgggagtccaagccaaagaagaagtctcgctggaaacccctaagtggaaaagatgcc
gagctgctggagacccacttcaaagagtacacagagagtggaccagtggacaacgtcatc
ttagacctggagaacaacttccaggtgtctctaacccataatgggcaagacatgaggatg
atgcagccatatgacgctccaatcaggaggagcttcctgccaggggtgaaggtggagtac
agcgtatcggcccgccagagtgcctaccgtgtccagatcaaccgcatacagatccagaat
cagctacctggagcaatcttcccatatgtcttctaccctataaaactacctaagtctgtc
accatggactcagagcccaaacctctgaccgacatcagcattgttaccagggcagccggg
cactctgatatctcacgcatcaagtatttcaaggtgctaatccaggagatggatctgaag
ttggacctgggcttcctctatgccgtcttggatctgttcactccggagaatgccagcgtg
atgacgtcagagcagcaggtggagttgtttgagaaggacatagagtatctgaagacagag
ctcaacgacgtctcggccactgacacgtcccctatcagtctctatgagtacttccacatc
tctcctatcaagctgcacctgagtttctctctgagttctggaggagaggatggtaacaag
gagaagagggagaccgagatcatccctgtccagtccctcaatctgctgctgaaaagcatc
ggagcaaccctcactgacgtgcaggatgtcgtcttcaaattggccttcttcgagctgacc
ttccagtttcgcactcgccagcaactacaatgggaggtcatcagacactactcgaaacag
gcgataaagcagatgtatgtgctggtgttgggcttggacgtgctgggaaacccctttgga
ctcattagaggtctgtcggagggagtggaggcattcttctacgagccctatcagggagct
atccaggggccagaggagtttgtggagggtatggcgctgggggtgaaagcgctggtagga
ggagcagtaggtggcattgcgggcgctgcctccaggatcacaggcgccatggcgaagggt
gtggctgccatgacgatggacgaggagtaccagcagaagagacgggaggccattaacaag
cagcctagcggcctgagagagggcctgacccgcggaggcaaaggactggtgtctggcttt
gtcagtgggatcacagggattgtcaccaagcccattaaaggtgctcagaaggagggtgcg
gcgggcttctttaagggtgtgggcaaggggctagtgggtgctgtggccagacccactgga
ggcatcatcgacatggccagcagcaccttccagggcatcaagagggcggctgagacgtcc
caggatgtggagagtctgcgtccgcctcgcttcatccacgaggacggggtcatccgacca
tacaaggaaagagagggcatcggcagccagatgctacagaaaattgaaaatggaaggttc
gccaagtacagatactttgcgcacgccaaagtgaacgagtctgatttcctgatgatcacc
aaaaggggaatctttttcgtgaccaaaggtacatttgggcagctgacctgcgagtggcag
tatctgttcgacgagttcaccaaggagcccatgatcgtggaagggaggcggcttcggatc
gaggccaaggagagagtgaagtctgtgtttcatgccaaagagtttgggaagattataaac
ttcagaagtccagaaatagccaagtgggttcttaccaagcttgaagacgccagggagagt
ctacacaaatactga
DBGET
integrated database retrieval system
