Salvelinus sp. IW2-2015 (Arctic char): 111957903
Help
Entry
111957903 CDS
T05762
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04142
Lysosome biogenesis
salp04144
Endocytosis
salp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
111957903
04142 Lysosome biogenesis
111957903
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
111957903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111957903
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111957903
Membrane trafficking [BR:
salp04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
111957903
Exosome [BR:
salp04147
]
Exosomal proteins
Proteins found in most exosomes
111957903
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
IFS
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
111957903
NCBI-ProteinID:
XP_023834761
LinkDB
All DBs
Position
LG33:complement(23934133..23963942)
Genome browser
AA seq
1649 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQDQVVIIDMADPNN
PSRRPISADSAIMNPTSKVIALKAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTEAAVYHWSMEGDSQPIKVFDRHVSLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGHPATGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAMRSNLAGA
DELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPGQPGQASPLLQYFGI
LLDEGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVYL
RANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPDQGLQFSQMLVADE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLLHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLFDIKRTLVHTHLLNPEWLVNFFGALSV
EDSIECLRAMLSANIRQNLQLCVQVASKYHEQLGTNALVDLFESFKSFEGVFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLKENTFY
DSTVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYMEV
VSAASKNDNWEDLVKFLQMARKKARESYVETELIFALAKTGRLAELDEFVSGPNNAHVQQ
VGDRCFEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFAC
VAGEEFRLAQICGLHIVIHADELEELISDYQDRGYYEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTMMS
HPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDYKPLLTNDLLTVLSPRLDHSRAVTYFT
KMNQLKLVKPYLRSVQSHNNKGVNEALNNLLTEEEDYQGLRASIDVYGNFDTIVLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVEVAEKVTVEK
LEVSESQRKTEEKVTEPTPIVFGRFGSAV
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagctgcagaacctgggggtg
aatccggccaacatcgggttcagctacctgaccatggagtctgacaaattcatctgcatc
cgggagaaggtgggtgagcaagaccaggtggtgatcatagacatggctgaccccaataac
cccagcaggcgacccatttccgctgacagcgccatcatgaaccctacaagcaaggtcatt
gccctgaaagctgctaagtgcctgcagatcttcaacattgagatgaagagtaagatgaag
gctcacaccatgacagaggaagtcatgttctggaagtggatttctgtcaacaccgtcgca
ttggtgactgaagcggccgtctaccattggagcatggagggggactctcagccaatcaaa
gtgtttgatcggcacgtcagtctggccggttgccagatcataaactacagaacagacgaa
cagcagaagtggcttctgcttatcgggatctcggcacaacaaaaccgtgtggtgggggcc
atgcagctgtactctgtggacaggaaggtgtcccagcccatcgagggacatgctgcagcc
ttcggagagtttaaggtggagggcaacaccaaagcctccactctcttctgctttgctgtg
cgcagccaggctggtggcaagctgcatatcatagaggtgggtcacccggctacagggaac
cagccatttaccaagaaggcggttgatgtgttcttccctcccgaggcgcagacagacttc
cccgtcgccatgcagattggcaccaagcatggcgtgatctacttgatcactaagtatggc
tacatccacctgtatgatctggagtcgggagtgtgtatctatatgaaccgcatcagcgct
gagaccatcttcgtcactgccccccacgaacccacctccggcatcatcggggttaacaag
aagggacaggtgttgtcagtgtgtgtggaggaggagaacatagttaactatgccaccaac
gtgctgcagaacccagacctgggcctgaggatggccatgcgttctaacctggccggggca
gatgagttgtttgccaggaagttcaacacgctgttcgcccagggctcctactctgaggct
gccaaggttgctgcctccacaccaaagggtatcctgcgtacagcggagaccatccgtaag
ttccagagtgtgccaggccagccgggccaggcctctcccctgcttcagtactttggcatc
ctgctggacgaaggccagctcaacaagtttgagtctctggagctgtgcaggcctgtgcta
cagcagggacgcaagcagctgctggagaagtggctgaaagaggacaagctggagtgttct
gaggagcttggtgacctggttaaggcagtagatcctactctagccctcagcgtctacctc
agggccaacgtacccagcaaggtgatccagtgcttcgctgagaccggacagttccagaag
atagtgctttacgccaagaaggtgggctactctccagactgggtttttctgttgaggaat
gtgatgcgggtcagtccagaccagggtctacagttctctcagatgctggttgcagatgag
gagcccctggccaacatcaaccagatagtggatgtgttcatggagggcagtctgatccag
cagtgcacctcattcctattggacgctctgaagaacaaccagccagccgagggacaccta
cagacacgcctactggaaatgaacctcctccatgctccccaggtggccgatgcaatcctg
ggaaaccagatgtttactcactatgaccgagcccacatcgcccagctgtgtgagaaggct
gggctgctgcagagggctctagaacactacactgacctgttcgacatcaaaaggactctc
gtacacacacacctgctcaaccctgagtggctggtgaacttctttggcgccctgtcagta
gaggactctatagagtgtcttcgggccatgttatcagccaacatccgacagaaccttcag
ctgtgtgtccaggtggcatctaaataccacgaacagctgggaacaaatgccctggtggat
ctcttcgagtccttcaagagctttgagggtgtgttctacttcctgggttccatagtgaac
ttcagccaggaccctgacgtccattttaaatacatccaggcggcctgtaagaccggacag
atcaaggaggtggaacgcatctgtagagagagcaactgttacgacccggacagggtcaag
aatttcctcaaggaggctaaactgacagaccagctgcctctgatcatagtgtgtgaccgc
tttgactttgtccatgacctggttctctacctctaccgcaacactctgcagaagtacatt
gagatctatgttcagaaggtgaaccccagccggctgccggtggtgataggaggtctgttg
gatgtagactgtgctgaagacgtcattaagaacctgatcatggtggtgagaggacagttc
tccacagacgagctggtggcagaggtggagaagaggaacagactgaagctgttgttgccg
tggctggagtctcgtatccacgaaggctgtgaggagccggctacccacaatgccttggct
aagatctacatagacagtaacaacaacccggagcgcttcctgaaggagaacaccttctac
gacagcactgtagtggggaagtattgtgagaagagagacccccacctcgcctgtgtcgcc
tacgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactccctgttc
aagagtgaggctcgctacctggtcagacggaaagacccagaactatgggccaatgttcta
gaggagaacaacccttatagacgccaactcatagaccaggtggtgcagacagctctgtca
gagacccaggacccagaggaggtgtctgtgacggtcaaggccttcatgacagctgacctg
cccaatgagctcatcgaactactggagaagattgtactggacaactcagtcttcagcgag
caccgaaacctccagaacctgttgatcctgacggccatcaaggcagaccggacgcgtgtg
atggagtacatcaaccgcctagacaactacgacgctccagacatcgctaacatcgccatc
agcaatgagctcttcgaggaggccttcgccatcttcaaaaagtttgacgtcaacacctca
gccattcaggttctgatcgagcatatcagtaacctggacagagcctatgagtttgcagag
cgttgtaatgaggctgctgtatggagtcagctggccagagcccagctccagagagacctg
gttaaagaggccatcgactcctacatcaaagctgacgacccgtcagcctacatggaggtg
gtcagcgcggccagcaagaacgataactgggaggatctggtgaagttccttcagatggct
cgtaagaaggcccgggagtcgtacgtagagacagaactcatctttgctctggctaaaact
ggcagactggccgaactagatgagtttgttagcggccctaacaatgcccatgtacaacag
gtgggagataggtgttttgaggagggcatgtatgatgctgccaagctgctgtataataat
gtgtccaactttgcccgcctggcgtccacgctggtacacctaggagagtaccaggctgct
gtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgttttgcgtgt
gtggctggggaggagtttcggttggctcagatctgtggtcttcacatcgtcatccacgct
gatgaactggaggagctcatcagtgactatcaggaccggggctactatgaggagctgata
gccctgttggaggcagcattaggtttggagcgtgctcacatgggcatgttcacagagctg
gccatcctctactccaaattcaaaccccagaagatgagagaacatctggaactcttctgg
tcccgtgtcaacatccctaaggtgctgcgagcggcggagcagtcccacctgtgggcggag
ctagtgtttctgtatgataaatacgaggagtatgacaatgctgtcctcacgatgatgtca
caccctactgacgcatggaaggaggtgcagttcaaggacatcatcgccaaggtggccaat
gtggagctgtactacaaatccctttccttttacctggattacaaacctctgctgacaaac
gaccttctgaccgtactgtcaccacggttagaccacagccgagcggtcacatacttcacc
aagatgaaccagttgaagttggtaaagccttacctgcggtcagtccagagtcacaacaac
aagggagtcaacgaggccctcaataacctgctgacagaggaggaggactaccagggtctg
agggcatcgatcgatgtgtatggtaactttgacaccattgttctggcccagagactggag
aagcatgagctgattgagttcagacgcatcgcagcatacctctacaaaggcaacaaccgc
tggagacagagcgtggaactctgcaagaaagacaaattatacaaggatgcaatgctgtat
gctgccgagtctaaggatgcagaattggctgagaccctgctgcagtggttcctggaggag
ggcaggaaggagtgtttcgctgcctgtctgtttgcctcctatgacctgctgcaccctgat
gtggtgctggagctggcctggagacacaacatcatggactttgccatgccatacttcatc
caggtcatgagggagtatctcaccaaggttgaggttgcggagaaggtgacggtggagaaa
ctggaggtgtcagaaagccaaaggaagactgaggaaaaagtcacagaacccacccccata
gtgtttggtaggttcggtagtgcagtctga
DBGET
integrated database retrieval system
