Salvelinus sp. IW2-2015 (Arctic char): 111958217
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Entry
111958217 CDS
T05762
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111958217
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
111958217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
111958217
NCBI-ProteinID:
XP_023835193
LinkDB
All DBs
Position
LG4p:320010..350837
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AA seq
2116 aa
AA seq
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MSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRC
LAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHHELSSEEDGEWESGLSYECRTLLF
KAVHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKSEHLSCAFTFFLHGDSNVCTSVEI
AQHQPVQRLGEEHLSLAQQNASPLQVILSPYGLNGTVTGQSFKMSDHPTQKLIAEWRQFY
PISPSAKDRPEDKMEDADWEDDSLAAVEVLVAGVRMVYPACLVLVPQSDLPALAPQGSAN
PSPVLCEGHGAHRDPAMSSVTLTPPTSPEEAQTDSQAAQRWLKLCSTVDGFSSNSSGIHG
SKIPRRLAAQVVENVWQECTTNRAQNKRKXATLTNGTCEEEEGDKTGVWDFVEFSHRAHC
NCSRHKNQKQRSGSTSGNPPSVGQPSQPLPKHKLGEKLEKGEKQQKRPQTPFHHRSYVFE
EQAMEPRRLCMRTQDEGPYPSLHHVDTAPSKAPMLHTHRPLQDLAGSPQPPPLSPHPCER
GEEDPGAMKSSSTPIHQHFYPPSSEPCLLPQKTSSDEPHLEPLPLPFPPAYPDSLEPTVY
VGSAINPNEDSAHNPWKYFNLPRKKNSDFFTPLLPVDKLQDDSGEGGGQENIVSVTELMS
GSGRPLKVSEDLVRTYTQRRNSHLAAAMADEDQEEEPDPYAFVEGDEEFTFTDKKDKPGS
DRETSKRHKGDDGSGTSADDGQGAAGGKPVPSTSLIHETDLAVSINDLDNLFNSDEDELA
PGSRRAGVNGDKFGSKEHKTSNLDPLSCISSADLHKMFPTPPSLEQHIMGYSPMNTGGKD
YGGLEAGVGLTLLDGSQFSSHYKMEVEEGFCSPKPSEIKDFSFVYKSEACKAFTGCSMFA
PLKMLPSQCMMPIKLPEDCVYTPSWNMGKLELIPPVPTMGLLTKDGNIPSVEPDYQSYTP
QTHTPFMSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYDNSDL
YSPASTPSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMN
IRGADVGVYLNDNGEAQYPCTCGFSAVVNRRYGSSAGLFLEDELDVVGRGSDAGRDSERR
FQELRAASLHRIGNPTERPPDELILLLQDQCTNPFSRMAGVEYPKALSSGPSHSSLRVEE
RDCYNDCYMALEHGRQFMDNMSGGKVDEALVKSTCLHNWPKRKAAEVSRLFSQDVLRVLL
SLQPVLQDAIQKKRSVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYD
FVVLSPFGLPYWEKLLLDPFGSHRDVGYVVICPENEALLRGAKSFFKDLTATYEACRLGQ
HRPICKTHADGILRVGTAEGRNRAEQPLSDWFLKMASSNGNSEAFSKLKLYAQVCRHDLA
PYLAGQSLDSSLLNQRGPTVASPQFSSSQSPTTPFSGPQSATSSSTAQPANTNSTPPSST
GPQAMGGTGGVGMPSAKPSSYTPYGTSGLQGSVSQNGPQSGAQTAGENGPTANQPQASTE
PVETTLERDKVGVPTDGESHAVTFPPSIVVYIVDPFSYGERDTHSSVWTLGLLRCYVEML
QFLPPHIRNSVSVQIIPCQYLLQPVRIEERHLYGQHLKSLAFSVFTQCRRPLPGNTNIKA
LTGFGPGLAIDMALRNTERPECLRLYTPPFILAPVKDKQTELGETFGEASQKYNVLFVGY
CLSHDQRWLLASCTDQSGELLETCIISIDVPNRARRKKGSARRLGLQKLWEWCLGLVQVT
SLPWRVVIGRLGRMGHGELRDWSILLSRRNLQSLSKRLKETCRMCGISAADTPSILSACL
VAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAMVQVNNG
TTEQNLDIAFNPINPDGSDGMGIFDLFDNDMVDPDLINILPNSPTTSPVHSPGGHYHQGG
DGSKGQSTDRMESHEEALNILQQPMALGYFISTAKAGPLPDWFWSACPQAQNQCPLFLKA
SLHLHVSSVQSDELLHSKHSHPLDSNHTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPV
HFVVLNQMYNFIMNML
NT seq
6351 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatgttttgtaccaaacggggccagtttggaggactgccactccaacctattt
tgcctggctgacctgactgggataaaatggcgacgttttgtgtggcaggggcccacttcc
tcgcccatcctgttccccgtgacggaggaggaccccatcctgtgcagcttcagtcggtgc
ctggcggccgatgtgctaagcgtgtggcgaaggcaccacaccccgggtcgccgcgagctc
tggctcttctggtggggggatgaccccagcttcgccgagctcatccaccacgagctgtca
agtgaggaggacggcgagtgggagagtggcttgtcctatgagtgccgcacactcctgttc
aaagctgtccataacctgttggagcgttgcctcatgaaccgcagctttgtccgtattggc
aagtggtttgtcaagccctacgagaaggatgagaagcccatcaataagagtgagcacttg
tcgtgtgcgttcacctttttcctgcatggggacagtaacgtgtgcaccagcgtcgagatt
gcccagcaccagcctgttcagaggctaggtgaagaacatctgagcctggcacaacaaaat
gccagccccctgcaagtcatcttgagtccatacggtctgaacgggacggtcacgggccag
tccttcaagatgtctgaccaccccacccagaaacttattgcggagtggaggcagttctat
cccattagccccagtgccaaggaccgccctgaggacaagatggaggatgcagactgggag
gacgactcactagcagccgtggaggtccttgttgctggagtgaggatggtgtaccctgcc
tgtctagtactggttccccagtcagacctacctgccctggccccacagggatcagccaac
ccctcacccgtcctgtgtgagggccatggggcccacagagaccctgccatgtcctctgtc
acccttacccctcccacatcaccggaggaggcccaaacagattctcaggcagcacagagg
tggttgaagctctgctcgacagtggatggtttcagctccaacagcagcggtatccacggc
agcaagatcccccgcaggctggctgcccaggtggtggagaacgtgtggcaggagtgtact
accaaccgggcccagaacaagaggaagttwgctacattgaccaacggtacctgtgaggag
gaggagggggacaaaacaggagtgtgggattttgtggagttctcgcatagggcacactgc
aactgctcaaggcataaaaaccagaaacaacgatcaggcagcacctcaggaaaccccccg
tcggtgggccagccctcacagccgctgcccaaacacaagctgggcgagaagctggagaag
ggggagaagcagcagaagaggccccagacacccttccaccaccgcagctatgtgtttgag
gagcaggccatggagccccggaggctgtgtatgagaacccaggatgagggcccctacccc
agcctgcaccacgtggacacggccccttccaaagcccccatgttgcacacccacaggccc
ctccaagacctggccggctccccccagccccctcctctcagcccccacccctgcgagcgc
ggggaggaagaccctggggccatgaagagctcctccacacccatccaccaacacttttat
cccccctcctccgagccctgcctgctgccccaaaagacctcgtctgacgagccccacctg
gagcccctgcctctgcctttcccccctgcctaccctgattccctggaacccactgtctat
gtgggatcagccatcaaccccaacgaagactcggcccacaacccctggaagtacttcaac
ctgccacggaagaagaactcagacttcttcacaccactgttgcctgtggacaaactacag
gatgactccggggaaggaggaggacaggagaacattgtctctgtcacagaattgatgtct
ggctctggcaggcctctgaaggtgtctgaagacctggtgaggacctacacccagaggagg
aacagccacctagcggctgccatggctgacgaggaccaggaggaggaaccagacccctac
gccttcgtggagggagacgaggagttcactttcactgacaagaaggacaaacctggctcg
gacagagagaccagcaagagacacaagggtgacgatggcagtgggacctcagcagatgac
ggtcagggtgcagctggtggaaagcctgtaccctccaccagcctcatccatgagacagac
ctggctgtgtccatcaacgacctggacaacctcttcaactcagacgaagatgagctagcg
cctggatccaggagagcaggagttaatggagacaagtttggcagtaaggaacacaaaaca
tcaaatctggaccctctgtcctgcataagctcagctgacctgcacaagatgttccccacc
cctccctccctggagcagcacatcatgggctactcccccatgaacactggggggaaggac
tatggtggcctggaggctggggtgggcctcactctgctggatgggagccagtttagcagc
cactacaagatggaggtggaggaaggcttctgcagccccaagccttctgagatcaaggac
ttctcatttgtttataagtcagaggcgtgcaaggcattcacgggctgctccatgtttgcg
ccgctgaagatgctgcccagtcagtgtatgatgcccatcaagctgccagaggactgtgtt
tacacacccagctggaacatgggcaaactggagctcataccccctgtgccaaccatgggc
ctcctcaccaaagacggtaacatccccagtgtggagccagactaccagagctacacaccg
cagacccacactcccttcatgtccaacagtgccccacccagcaacagcggcacgggcatc
ctgccctccccggccacaccccgcttctccgcccccactccacgcactccccgtaccccg
cgcaccccaagagggcctgccagtgtccagggatcgctcaaatacgacaactctgacctc
tactcgcccgcctccaccccttccacttgccgacctctcagctcagtggagccagccact
gtgccctccatccctgaggcccacagcctctacgtcaccctcatcctttctgagtccgtc
atgaacctcttcaaggactgtaactttgacagctgctgcgtgtgcgtgtgcaacatgaac
atccgtggcgctgatgtgggcgtgtatcttaacgacaacggcgaggcccagtacccctgc
acttgtggtttcagcgccgtggtcaaccgtcgctacggcagctcggccggtctcttcctg
gaggatgagctggacgtggtggggcgtggctcggacgccggccgggactctgagaggcgt
ttccaggagctgcgcgctgcctcccttcacaggatcggcaaccccacagagaggccccca
gacgagctcatcctgttgctacaggaccagtgcaccaacccattctcccgaatggctggg
gtggagtaccccaaggcgttgtcctccggtccctctcactcttctctacgggtagaggag
agggactgctataacgactgctacatggctctggagcatggccggcagttcatggacaac
atgtcaggaggcaaggtggacgaggcgctggttaagagcacgtgtctacacaactggcct
aaacgcaaagctgcagaagtgagcaggctgttctctcaggatgtgctgcgggtgctgctc
tccctccagcctgtactccaagatgccatccagaagaagagaagcgtacgttcctggggc
gttcagggacctctcacctggcagcagtttcacaagatggccggcaggggatcctacggc
actgacgagtctccagagcccctccccatccctaccttcctggtgggctatgagtatgac
tttgtggtgctgtcgcccttcggcctgccttactgggaaaagttgctgctggaccccttc
ggctcccacagggacgtgggatatgttgtcatctgtcctgagaatgaggctctgctccgt
ggggctaagagcttcttcaaggaccttacggccacgtacgaggcctgtcgactgggtcag
cacagaccaatctgtaagactcatgcagatggaatattgcgggttggtacagcagagggc
aggaaccgggcagagcagcctctcagtgactggttcctcaagatggccagcagtaacggg
aacagcgaagccttcagcaaactcaaactgtacgctcaagtgtgccggcatgacctggct
ccatacctggctggacagtctctggacagctctctgttgaaccagcgtggccccactgtg
gcctccccccagttctcctcctcccagtcccccacgacccccttctcaggtccccagagc
gccaccagcagcagcactgcccagcctgccaacaccaacagcaccccaccctcctccaca
ggcccccaggcaatgggagggacagggggggtaggaatgccgtcggccaagcccagctcc
tacacaccatatgggacatcaggcctgcagggcagcgtctcccagaatgggccccagtcg
ggtgctcagactgcaggggagaatggccccactgccaaccagccccaggccagcaccgag
cccgtagagaccacattagagagagacaaggtgggcgtccctacagacggggagtcccac
gctgtgacgttccccccgtccattgtggtttacattgtggaccccttcagctacggggag
agggacacccactccagtgtgtggacgctgggtctgctgcgctgctatgtggagatgctc
cagttcctgccacctcacatcagaaactctgtgtctgtgcagatcattccctgtcagtac
ctgttgcagcctgtgcgcattgaggagcgccatctgtacggtcagcatctcaagtccctg
gccttctcggtgttcacccagtgcagacgacccctccccggcaacaccaacatcaaggct
ctgacgggcttcggcccaggcctggccatcgacatggcactgaggaacacagagaggcca
gaatgtctgcgtctgtacacaccaccgttcatcctggcacccgtcaaggacaagcagaca
gagctgggggagacgttcggtgaggcctctcagaagtacaatgtgctgtttgtgggctac
tgcctgtcgcatgaccaacgctggctcctagcctcctgtactgaccaatcaggagagctt
ctggagacatgcatcatcagcatcgacgtgcctaacagggctcggaggaaaaagggttca
gccagacgactgggcctgcagaagctgtgggagtggtgtctaggcttggtgcaggtgaca
tcactgccctggagggtggtgattggccgcctgggcagaatgggccacggagagttacga
gattggagtattctgctgagcagaaggaacctgcagtctctcagcaagcgcctcaaggag
acctgcaggatgtgtggcatctctgccgcagacactcccagcatcctcagcgcctgcctg
gtcgccatggagcctcagggctcctttgtcatcatgccagactctgtgtcgacaggctca
gtgttcggccgcagcaccactctgaacatgcagacgtcccagctgagcactcctcaggac
acgtcctgcacccacatcctggtgttccccacctcggccatggtgcaggtgaacaacggc
accaccgaacagaacctagacatcgccttcaaccccataaaccctgatggttcagatggg
atgggcatctttgacctgtttgataacgacatggtggaccctgacctcatcaacatcctg
cctaactcccccaccacctcccctgttcactccccgggtggacactatcaccagggggga
gatggcagcaagggccaaagcacagaccgtatggagtcccatgaggaggccctgaacatc
ctgcagcagcctatggctctgggctacttcatctccacagccaaggctggccccctgcct
gactggttctggtcagcctgcccccaggcacagaaccagtgcccactgttcctcaaggcc
tccctgcacctccacgtgtcctcggtccaatcagacgagctcctccacagcaaacactcc
caccctctggactccaaccacacctcagatgtgctcaggtttgtgctggagcagtacaac
gccctctcctggctgacgtgtgaccctgccactcaggaccggcgctcctgtctgcctgtt
cactttgtggtgctcaaccagatgtacaactttatcatgaacatgctctga
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