Salvelinus sp. IW2-2015 (Arctic char): 111958872
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Entry
111958872 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111958872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111958872
03021 Transcription machinery [BR:
salp03021
]
111958872
03036 Chromosome and associated proteins [BR:
salp03036
]
111958872
Transcription factors [BR:
salp03000
]
Eukaryotic type
Helix-turn-helix
ARID
111958872
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111958872
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111958872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
Motif
Other DBs
NCBI-GeneID:
111958872
NCBI-ProteinID:
XP_023990673
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All DBs
Position
LG35:complement(20813231..20834068)
Genome browser
AA seq
1261 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPNEDSILGEKQQENKQSGLERGSPGRGDLQDGADV
GNAGGGGEPEMKNGNGNPSRTNNNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVPSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPHSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRIYPNYPSSEYSNQEGASKGPTDTGSSGQYGGGNPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPMAKMRGQTYGGGSPYSQQPGQGPPPGAQQGHAYPGQGYGPLGSQRYPV
VMQGRTPGAMGGMQYGQQMSSYGQQGPGGYGPQGQGPYYGQQGQALHPGQQQGPYPQAPL
GQQGGQTPYAQQSHPPQTSASHAQGGPLYPQPHMPPQSQGPQPGPSQGPPQSQPPYSQGP
AQAQAQSGQPPYPQQQGPPSQPPQQASSQVPAGSQPQLSYPPTQGPQQPPTQQQQQQPQT
PSQPPQQPPGHSQHPQGQPASYSQNPPQQQQQSQQSPYQRFPPPPQQEISQDSFSSQSSA
PPSNQPKSVSEDVSMQGQPSSLPDLSGSIDDLPTGTDGALSPGVSTSGVSSSQGEQSNLA
QSPFSPHTSPHLPGIRGPSPSPAGSPASATTSRTGPLSPATMPGTQMPPRPSSVQSDGSL
HPAMSQSPMAQERGFIQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGPYQQQNNSMVG
YGPQGGQYGPQGYPRQPGYNNMPNANYPGMGNPMNPGPGMGNPINPMSGQGVLPYAGIPP
GRMPAGQMGVRPYGPNMGPNMPPNMGNMPPQVGSGMCPPPGLNRKAQEAAAVVMQHAATN
SIHSRMPGYPNMSPGMMGSGAPYGPPMNNMPGMMNAQGGPPFPMGPNMANNSSGLAPSPE
FGMDGKMNQGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKMWVDRY
LGFIEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVNKNKKWRELSTNLNVGTSSS
AASSLKKQYIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPAGSGSLQGPQTPQ
STSSSMAEGSDLKPPTPASTPHPTQMPPGARSNVALQDPFADGTDPAFPRRNSMXPNSGY
QSGMSTPEMPGRMGPGPYEGPGPNKDPLWPCGKEWKVTHEFGSVIQSLLIDPSPASHSTA
P
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactctcaacacaagtccgccttccgaactaaag
aaaccggatcgagacccaaatgaggattctatactgggggaaaagcagcaggaaaacaag
cagtcgggattagagcgcggatctccgggccggggggatctgcaggacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccttccagg
actaataataatcagaatgattccatcggatccgaggggaataaccatcccgggatggta
caccaccatgggtccggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgccgtcgagtaatatgatggacccatatcaacccaattcgcacgaccatggcttt
tctaatcaccagtttaacaattacaatccattcccgaacagaactccccattctggccaa
ggatacggcatgaacccctcacgtaatacccaggctccggcagctgggggacagccagct
aacgttaaacagcaaccagcaggaggacccacagcaatggctgcatcttacaacaaccag
agatataatatggggaatccacagccaacgtctaccccaactctcaaccagctactaact
tctccaagctccacgcgtatatatccaaattacccatctagtgaatatagtaatcaggaa
ggcgctagtaagggaccaacagacacgggcagtagcggtcagtatggaggggggaatccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcctccaggtgcaatggatccgatggctaaaatgagaggccagacg
tacggagggggcagtccatactcccaacaacctgggcaggggccaccaccaggagcccag
caaggtcacgcatacccgggccaaggctacggtccccttggctcccagagatacccggtg
gtcatgcagggccgcacccctggggctatggggggcatgcagtacgggcagcagatgtcg
tcttatgggcagcagggaccaggaggctatgggcctcagggccaagggccctactacggc
caacagggccaggctttacacccaggccagcagcaagggccctacccccaggcacctctg
ggacagcagggtggtcagacaccctacgctcagcagtcccaccctccacagacgtcagcc
tcacatgcccagggtgggccgctctatccgcagccccacatgcccccccagtcccaggga
ccgcagccaggtccatcccaagggcccccgcagtctcagccgccctactcccagggtcca
gcccaggctcaggcccagtctggtcagcctccttacccccagcagcaggggcctcccagc
cagcctccacagcaggctagctcccaggtcccagcagggtcgcagccccagcttagctat
ccacccacgcagggcccacagcagccccccacacagcagcagcagcagcaaccccagaca
ccctctcaaccccctcagcaaccaccaggtcacagccagcatccacagggccagcctgca
tcctactcccagaatcctccacaacagcaacagcagtcacagcaatcaccttaccaacgc
ttccctcctccaccacagcaggagatatcccaggactcgttcagttcccagtctagcgcc
cctccctccaaccagcccaaaagtgtctcggaggacgtcagcatgcaaggccagccgtcc
agcctaccggatctctcaggctccatcgatgacctgcccacgggcacggatggcgctctg
agtcctggcgtgagcacttcaggtgtgtcaagcagccagggcgagcagagcaacctggcc
cagtcgcccttctcgccccacacctctccccacctgccaggcatccgagggccctcaccg
tcacccgccggctcccccgccagtgccaccacctcccgcacggggcccctctcacccgcc
acaatgccagggacccagatgccccctagaccatcgagtgtacagtctgacgggagtctg
caccccgccatgagccagtctccgatggcccaggagagagggttcatacagagaaacccc
cagatgcccccatacggttcaccacagtctgcctctcccctgtcaccccgacagtcctct
ggaggccagatgcaccctgggatgggaccttatcagcagcagaacaactccatggtgggc
tatggacctcagggtgggcagtatggcccacaaggttacccccggcaacctggatacaac
aacatgcccaatgccaactaccctggcatgggcaaccccatgaaccctggccctggcatg
ggcaaccccataaaccccatgtctgggcaaggggtgctgccgtacgcaggcatcccccct
ggtagaatgcctgcgggccagatgggagtgcgtccctatggccctaacatggggcccaac
atgccacccaatatgggtaacatgccacctcaggtgggctcagggatgtgccctcccccc
ggcctcaaccgaaaggcccaggaggctgcagctgtagtcatgcaacacgctgctaccaac
tccatacacagcaggatgcctggctaccccaacatgtcccctggcatgatgggctctggc
gccccctatggccctcccatgaacaacatgcctggcatgatgaacgcgcagggcggcccg
cctttccctatggggcccaacatggccaataactccagtggtttggcccccagtccagag
tttggtatggatgggaaaatgaatcagggccagaagatgaacaacaaagtggacggaaca
ccgaaagcagaaccgactaaatccaagaagtcgagctcttccacgacaaccaacgagaag
atcacgcgtctgtatgagctgggccccgagctcgagaggaagatgtgggtggaccgctac
ctgggctttattgaggagaaagccatgggcatgaccaatctgcctgctgtgggccgcaag
cccctagacctcttcagactctacgtctcggtcaaggagattggaggcttcgcacaggtg
aacaagaacaagaagtggcgggagctgtccaccaacctgaacgttggcacgtcgagcagt
gctgccagctccctgaagaagcagtacatccagtgtttgtacgctttcgagtgcaagatc
gaacgcggggaggacccccctcctgagatcatcactgacaacaagaaggccaaccaggcc
aaggtccagccaccctccccagctgggtcaggttctctccagggccctcagaccccccag
tccaccagcagctccatggccgagggcagcgacctcaagccccccacacccgcctccacc
ccacaccccacccagatgccacccggggccaggagcaatgtggcgctgcaggacccattt
gctgacggtactgacccagctttccccagaaggaactccatgnaccctaactctggctac
cagtctggcatgagtaccccagagatgccaggtcgcatgggtccagggccctacgagggt
ccagggcctaacaaagaccctttgtggccatgcggaaaggaatggaaggtgacccatgag
tttggttctgtcatccagtccctgctgatcgacccttctccggcctctcactccacggct
ccttag
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