Salvelinus sp. IW2-2015 (Arctic char): 111959107
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Entry
111959107 CDS
T05762
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
salp03009
]
111959107
04121 Ubiquitin system [BR:
salp04121
]
111959107
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
90S particles
Other 90S particles
111959107
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111959107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
eIF2A
ANAPC4_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
111959107
NCBI-ProteinID:
XP_023836320
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All DBs
Position
LG35:complement(4496298..4511337)
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPSLHPFEVPREYTRALNATKLERVFAKPFLT
SLDGHRDGVNCMAKHPKSLSTMLSGSCDGELKVWNLTKRECVRTLQAHEGFVRGVVVRFC
GTSFFTVGDDKTIKQWKMETPGYGEEEEPLNTILGKSVFTSIDHHQKEGVFVTCGQQVDI
WDEQRSNPIRSFSWGVDSFNCVRFNPVETELLASCASDRSIVLYDMREATPLKKVIMNMR
SNTLCWNPMEAYNFTCSNEDYNLYTFDMRYLDKPVTVHMDHVSAVLDVDYSPTGKEFVSA
SFDKTIRIFPKDSGHSREVYHTKRMQHVISIKWSSDNKYILSASDEMNIRLWKANAAEKL
GLLAHREKSAVNYSQKLKEKFQHHPQIRRISRHRHLPKSIYSQSKELRVMKEARRRKERN
VRKHSKPGSMPVVTEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaagtcctctccaggaatccggacgactatgtccgtgagacgaagttggat
atccagcgtgtaccacggaattacgacccgtccctccatccgttcgaggtgccaagagaa
tacacccgtgccctgaatgccaccaagttggagcgcgtgttcgccaagccgttcctgact
tctctggacggccacagggatggggtgaactgcatggccaagcaccccaagagcctctcc
acaatgctgtccggctcctgcgatggagagctgaaggtgtggaatctaaccaaacgtgag
tgtgttcgtacactccaggcccatgaaggctttgtcaggggggtggtcgtccgcttctgt
ggcacctccttctttacggttggtgatgacaagactatcaaacagtggaagatggagact
cccggctacggagaggaagaggaacctctcaatactattcttgggaagtctgtgttcacc
agcatcgaccaccaccagaaggagggtgtgtttgtgacgtgtggccagcaggtggacatc
tgggatgagcagcgcagcaaccccatccgctccttctcctggggcgtggacagtttcaac
tgcgtccgcttcaaccctgtagagactgaacttctagcaagttgtgcctctgacagaagt
attgtgctgtatgacatgagggaagcgacacctcttaaaaaggtaatcatgaatatgagg
agcaacactttgtgctggaatcccatggaagcttataatttcacctgctctaatgaagat
tacaatctgtatacatttgatatgaggtacctggacaagcctgtcaccgtccacatggac
catgtctcagccgtgctggatgtagactactctccaactggtaaggagtttgtctcggcc
agctttgacaagaccatccgcatcttccccaaagacagtgggcacagcagggaggtgtac
cacaccaagcgcatgcagcacgtcatctccataaagtggtcgtcagacaacaagtacatc
ctgagtgcttcagatgagatgaacatcagactgtggaaggccaacgctgctgagaagttg
ggattgctggctcatagggaaaagtcagctgtgaactacagccagaagctgaaggagaag
ttccagcaccaccctcagatccgccgcatctcgcgccaccgccacctgcccaagtccatc
tacagccagagcaaggagctgcgtgtcatgaaggaggctcgccgcaggaaggagaggaac
gtacgcaagcacagcaagcctggctccatgcctgtggtgacggagaaagagaaacatgtc
gtcaccgtggtgaaatag
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