Salvelinus sp. IW2-2015 (Arctic char): 111959207
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Entry
111959207 CDS
T05762
Name
(RefSeq) ribonuclease ZC3H12A-like isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111959207
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
111959207
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
111959207
NCBI-ProteinID:
XP_023836467
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Position
LG35:16211703..16225965
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AA seq
667 aa
AA seq
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MDQAFPSLQTPVTGPFEPNPGELQLRVDFFRKLGYSPXEVRAALLKLGLSTDTNSVLGEL
VRSEASTSTSNSTIPESGDNTTGPTSHTGSSMASSRTHGPQRDRPVPSLEDRKDTDSGLK
PIVIDGSNVAMSHGNKQVFSCRGIELAVIYFLDRGHSTVIVFVPSWRKEQPRPDVPITDQ
HILMELEKKKIVVFTPSRRVGGKRVVCYDDRFIVKHAYESBGVIVSNDTYRDLQGERPEW
KRCIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKKPLLPEHKRQLCPYGKKCTYGV
KCKFYHPERTHQSHSSLADELREKARLSSAKEDRNPMMSHLRGHQSDPGSFPSYSLENDL
EHRLTLEPRRSLREGPKSQVTENTLLYWDGLRSSRNQQARSPTAVGQGQMDWPSMLSPST
TTDLPYASISHECLDSGFGSYESQSQYSDVSQGHSKAFRPRQQQQQGFPSGSRHPGMHPE
SLAQDSPQPCRCFHLAPSSGPQQQHHSNPHLDSHSQSQPRYDTYSPPLFPPNMHHYSLPC
NFQQDGVGAHHFHPHQHPQKYWSDPFHGGVPQARASCSLPPGPHLHQPPTPHGAPHSSYR
DQQEHDSWAQPPPPSAFDTEREELRKKLQAIFNPHQVDTVMGMFPHMMDAQKLAAEILNL
KSQRGAF
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagcctccagaccccagtcactggtccgtttgaacccaaccca
ggagagctccagctcagggtggacttcttcagaaagttgggctactcccccatrgaggtt
cgggccgccctgcttaagctaggcctgagtactgacaccaactctgtactgggggagctg
gtccgcagtgaagccagcactagtacttctaactcaaccatccctgagagtggtgacaat
actactggccccacaagccacacaggctccagcatggcctcctctaggacccatggcccc
cagagagacagaccagtcccatcactggaagacaggaaggacacagacagtggactgaaa
cctatcgttattgacggcagcaatgtggccatgagtcatggtaacaaacaagtgttctcc
tgtaggggaattgagttggcagtgatctatttcctggatagaggtcactcaaccgtcatt
gtgtttgtaccgtcatggcgcaaggagcagcccaggcctgatgtccccatcacagaccaa
cacattctaatggagctggagaagaagaagatagtggtcttcactccctcgagacgcgtc
ggtggtaaaagggtggtctgctacgacgaccgttttattgtgaagcatgcctacgagtcg
racggcgtgatcgtgtccaacgacacctatagggacctgcagggagagcgtccggagtgg
aagcgctgtatcgaggagaggctgcttatgtactctttcgtcaatgacaaattcatgccc
ccagatgacccgcttggccgtcatggtcccagtctggagaacttcctgaggaagaagcct
ctgctgccggaacacaagcgccaactctgtccttatggtaaaaagtgcacctacggtgta
aagtgtaagttctaccaccctgagcgcactcaccaatcccactcctcgttggctgacgag
ctaagggagaaggcaaggctctcctcggcaaaagaggaccggaatcccatgatgtcacac
ctgaggggccaccagtccgacccgggatcctttccctcctattctctggagaatgacctg
gagcacaggctgacgttagagccccgccgttccctgagggagggtcccaagagccaggta
actgagaacacgttgctatactgggatgggttgcgctccagtaggaaccagcaggcccgc
agccccacagcagtaggccaaggacagatggactggcccagtatgctctccccatccact
actactgacctcccctatgccagcatctcccatgagtgcctggactctggttttggctcc
tatgagagccagagccagtactcggatgtgtcccaaggacacagcaaggccttcaggccc
aggcagcagcaacagcagggcttcccctctggttccagacatccaggcatgcatccagag
agtctggcccaggacagcccccagccctgcaggtgtttccatttggctccatcctcgggt
ccccagcagcagcaccacagcaacccacacctcgattcccactcccaatcccagccgagg
tatgacacctactcgcctcctctgttcccacccaacatgcaccactacagcctcccctgc
aacttccagcaagatggggtgggggcacaccatttccacccccatcagcacccccagaag
tactggtcagaccccttccatggcggggtcccccaggctagggcgtcctgtagcctcccc
cccggcccccacctccatcagccccctaccccgcatggagccccccactcatcttacagg
gatcagcaggaacacgactcctgggcccagccacctccaccttctgcctttgacacagag
agagaggagctccgtaagaaactgcaggccatcttcaacccccaccaggtggatacggtc
atgggaatgttccctcacatgatggatgcccagaagctggctgcagagatcctcaacctc
aaatctcagagaggtgccttctga
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