Salvelinus sp. IW2-2015 (Arctic char): 111959443
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Entry
111959443 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111959443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111959443
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111959443
Complex C
U5 SnRNP specific factors
111959443
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
111959443
NCBI-ProteinID:
XP_023836757
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All DBs
Position
LG4p:complement(4777544..4804599)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPXQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDANKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSIKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccttatagaggggtacctggtggaatgcccccaggtatccatccc
ccagyccaggttccagattacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaagacatgccacctgagcatgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtctacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gtcctataccacatcactggagccatctccttcgtcaacgagatcccctgggtcattgag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaagagggac
cgtcgtcacttcaagcgtatgcgtttccctccttttgacgatgaggaacctccgctggac
tacgctgataacatcctggacgtggagccgctggaggccatccagatggagctggatgca
gaagaggactcctccgtggcggagtggctctacgaacaccagcccctcaaggacgccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggctctcaacatggccatccctgggggaccc
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagattatcatcagacagccaatcaggacggagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaacgtg
gttttcatcaagactgaggatcctgatttgccagcgttctactttgaccccctgatcaac
cccatctcccacagacactcaatcaagagtcaggagcctctgccagaggatgacgargag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggctccacgtcccttcaacttgcgctctgggagg
actaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccggcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgttccgttccttcaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggctacaacatgctcaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccacctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagtcatgtacagtacagactgggcaatgtggatgctttccagttgtcagacggg
ctgcagtacatctttgcccatgtgggccagctgactggcatgtaccgctacaagtacaag
ttgatgagacagatccgcatgtgcaaggacctcaagcacctaatctactaccgcttcaat
actggtccggtgggtaagggtccaggctgtgggttctgggccccaggatggagggtatgg
ctgttcttcatgaggggcatcacccccctgctagagagatggctcggcaacctgctggcc
aggcagttcgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgygtg
gagtcccactttgacctggagctgcgtgcggccgtgatgcacgacatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcstgg
cgctgctggaaggccaacattccctggaaggtcccaggcctgcccacccccatcgagaac
atgatcctacgctacgtgaaggccaaagctgattggtggaccaacacggcccactataac
cgcgagcgaatcaggcgcggcgcaaccgtggacaagactgtgtgcaaaaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacagtccactggctg
gagagcagacgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagaacaggcttatgacaaccctcacgaggcc
ctgtccagaatcaaacgtcacctgctcacacagagagccttcaaggaggtgggcatagag
ttcatggacctgtacagccacctggtgcctgtgtatgacgtggaacccctggagaagatc
acagatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctcctccactcctcgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagaatgtaacgtgatgctg
gagtctcgctatgagaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgaccgccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctgggcctccaccgg
gccagtgagatggctggaccccctcaaatgcccaacgacttcctgtccttccaggataca
gccacagagagcgcccatcccatccgcctctactgcagatacattgaccgcatacacatc
tttttcagattctcagctgatgaggccagggacctgatccagaggtacctgacggagcac
cctgaccccaacaacgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtccaatgggagaacagctttgtgtccgtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcag
aacgaggtgaccaaagagcgtacggcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtccgacagatcctcatggcctcgggatccaccaccttcacc
aagattgtgaacaagtggaacacggctctgataggtctgatgacgtacttccgcgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaaatgtgagaacaagatccagacc
cgtatcaagattggcctcaactccaagatgcccagtcgcttcccccctgtggtcttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tccgatctgaggtggtcgaagcagactgacgttggcatcactcatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgytacatccagccctgggagagt
gagttcatcgactcccagagagtctgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttagaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcggcacgacgggaagttgtggaacctyaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacgctcttcaaaggaacgtacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaartggaagaag
ctgaccaacgcccagagatctggtctgaaccagatccccaaccgtcgcttcaccctctgg
tggtcycccaccatcaacagggccaacgtgtacgtgggtttccaggtscagctggatctg
accgggatcttcatgcacggaaagatccccaccctgaaaatctccctcatccagatcttc
agggctcacttgtggcagaagatccacgagagtgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagatcgagacagtgcagaaagagaccattcaccccagg
aagtcctacaagatgaactcttcctgcgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgctgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggatcgacatacagcttcgctggggagactacgactctcacgacatcgag
cgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtatggtaac
tggttcccgggaggcaagcccctgatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggtctgcarctctactcctcagag
cccactgagccctacctgtcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctaccgtgtcaccatccacaagacgtttgagggtaac
ttgaccaccaagcccatcaatggagccatcttcatcttcaaccccaggacaggtcagctc
ttcctcaagatcatccatacctctgtgtgggccggacagaaacgtctgggacagctggct
aagtggaagacagctgaggaggtggctgctcttattcgttccctacctgtggaggagcag
cccaaacagatcattgtcaccaggaagggcatgctggatccccttgaggtgcacttgctg
gacttccccaacatcgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggttctcttc
aacctgtacgacgactggctcaagaccatctcctcctacaccgcattctcacgtcttatc
ctgatcctaagggcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagcctgat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgacgaggagtggatc
aaggtggaggtgcagcttaaagacctcatcctggccgactatggaaagaagaacaatgtc
aacgtggcgtctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagatcgctgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacgcagacacgcacagtcaacaaacacggagacgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacaggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagatccggtgtatcgtcatggtaccccagtggggaactcatcagaccgtc
cacctacccaatcagctgcctggtcacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctccccagctctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggacggagaraagaccatcatcatcacctgcagt
ttcactcctggctcatgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacaaaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgaccgcttcctgggcttcttcatggtgcctggacaggtt
tcctggaactacaacttcatgggtgtccgccacgaccccaacatgaagtatgacctgcag
ctgtccaatcccaaggagttctaccacgaggtccatcgcccctctcacttcctcaacttc
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
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integrated database retrieval system
