Salvelinus sp. IW2-2015 (Arctic char): 111959482
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Entry
111959482 CDS
T05762
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111959482
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111959482
09142 Cell motility
04820 Cytoskeleton in muscle cells
111959482
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111959482
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111959482
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111959482
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111959482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
111959482
NCBI-ProteinID:
XP_023836852
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All DBs
Position
LG36:21655901..21723191
Genome browser
AA seq
1644 aa
AA seq
DB search
MMVHCGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGSPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGTPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EVGGNTVTHFLPGPPGQRGETGDRGEKGSCIPYLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGGKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGRL
IEGPPGEKGQPGEIGQKGDXGADGDSLTGKPGQDGSIGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDKGLPGA
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVAPGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGLPGPKGEPARDGIKGDRGLDGEHGITGPPGERGPPGVPGFGRHGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGTPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGKPGTPGSKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLAGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGAGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPQGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGAGPKGEMGVMGTPGTPGYQGPSGNPGSSGLRGDPGISGPRGEFGEPGPKGE
RGEPGLQGPAGNMTDVDMEHMKGEKGDLGDPGDTGYTGEKGYPGQPGVPGMPGKDGETGT
PGQPGDKGDTGFPGEPGSIGYPGNKGGIGEMGYPGSVGTKGDKGIVGTPGHPGFRGTEGV
KGDKGHTGLPGVGVPGPPGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGVSGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGTPGFEGSHGQPGERG
LPGPAMEGPKGDQGLPGKPGEPGTSGAPGPAGVPGSVGGKGNKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHTFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPRCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccattgtggtacgctggttctgttggtggctgtatcctatactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggcttccgggtatccccggacaagatggcccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggatcacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcacacctggccccccaggggaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccatcacag
gaagtgggaggaaataccgttacgcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagagaaaggttcttgcattccctatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggcggccctggataccatggaacaccgggtggaaaaggagagaaa
ggacctccagcatatgttgatagtgcwcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcaggctt
attgaaggacctcccggagagaagggccaaccaggagagatcggtcagaagggagacags
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccatcggaccccct
ggacctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
gggccccccggcccaccaggactacagggagagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcggcccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacaagggcctgcctggagct
actgggcctgatggaagccctggtaattacggtactcctgggttgataggggctccagga
gcccatggtgagcctggggatatctacgtggctccagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
ctaccaggcctgcccggacccaaaggagaacctgcccgagatggcatcaagggggaccgt
ggtctggatggggaacatgggatcactggacccccaggagagaggggtcctcctggtgta
ccagggtttggccggcatggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccagggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctgggcctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaaaacca
ggcacacctggttcaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgaccggtttccctggagagaaaggcaaccttggtctagctggtatt
cctggacaagagggacacacaggaccacctggmgctcagggcatcaaaggtgaccacggc
ccccctggtcagcatggtggaactggaccccctggaccccctggagcaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctcttcggtcatgatggtgtgaag
ggtgataagggtttgcctggttctcctggtctggacatgcccggccctcagggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctgggggggcaggccccaagggagagatgggagtcatggga
acacccggaacaccaggatatcagggtccttctgggaaccctggaagttcaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagcctggacccaaaggagag
aggggagaaccaggtctccagggccctgctggcaacatgactgacgttgacatggagcac
atgaagggcgagaaaggagacctcggagatccaggtgacactggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagaccggtaca
cctggtcaaccaggtgataaaggagacacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctgtaggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacacaccggtctgccaggtgttggagtaccaggaccccctggagag
aagggtcagttgggtctgcctggtttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatc
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggccaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagagaaaggagtgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccagggtcatctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtacgccaggcttcgagggttcccatggccagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggcctgccaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgttccaggcagcgtgggggggaag
ggaaacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactgaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtccc
cctggtcctcctggcccccacaccttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctcgggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgacggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacgttgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgttcagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcccttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacacaagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccattgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag
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