KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111959482
Entry
111959482         CDS       T05762                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510  Focal adhesion
salp04512  ECM-receptor interaction
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111959482
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111959482
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111959482
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:salp04147]
    111959482
   00536 Glycosaminoglycan binding proteins [BR:salp00536]
    111959482
Exosome [BR:salp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   111959482
Glycosaminoglycan binding proteins [BR:salp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111959482
SSDB
Motif
Pfam: Collagen C4 FeoB_associated
Other DBs
NCBI-GeneID: 111959482
NCBI-ProteinID: XP_023836852
LinkDB
Position
LG36:21655901..21723191
AA seq 1644 aa
MMVHCGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGSPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGTPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EVGGNTVTHFLPGPPGQRGETGDRGEKGSCIPYLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGGKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGRL
IEGPPGEKGQPGEIGQKGDXGADGDSLTGKPGQDGSIGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDKGLPGA
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVAPGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGLPGPKGEPARDGIKGDRGLDGEHGITGPPGERGPPGVPGFGRHGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGTPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGKPGTPGSKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLAGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGAGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPQGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGAGPKGEMGVMGTPGTPGYQGPSGNPGSSGLRGDPGISGPRGEFGEPGPKGE
RGEPGLQGPAGNMTDVDMEHMKGEKGDLGDPGDTGYTGEKGYPGQPGVPGMPGKDGETGT
PGQPGDKGDTGFPGEPGSIGYPGNKGGIGEMGYPGSVGTKGDKGIVGTPGHPGFRGTEGV
KGDKGHTGLPGVGVPGPPGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGVSGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGTPGFEGSHGQPGERG
LPGPAMEGPKGDQGLPGKPGEPGTSGAPGPAGVPGSVGGKGNKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHTFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPRCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq 4935 nt   +upstreamnt  +downstreamnt
atgatggtccattgtggtacgctggttctgttggtggctgtatcctatactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggcttccgggtatccccggacaagatggcccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggatcacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcacacctggccccccaggggaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccatcacag
gaagtgggaggaaataccgttacgcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagagaaaggttcttgcattccctatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggcggccctggataccatggaacaccgggtggaaaaggagagaaa
ggacctccagcatatgttgatagtgcwcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcaggctt
attgaaggacctcccggagagaagggccaaccaggagagatcggtcagaagggagacags
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccatcggaccccct
ggacctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
gggccccccggcccaccaggactacagggagagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcggcccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacaagggcctgcctggagct
actgggcctgatggaagccctggtaattacggtactcctgggttgataggggctccagga
gcccatggtgagcctggggatatctacgtggctccagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
ctaccaggcctgcccggacccaaaggagaacctgcccgagatggcatcaagggggaccgt
ggtctggatggggaacatgggatcactggacccccaggagagaggggtcctcctggtgta
ccagggtttggccggcatggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccagggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctgggcctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaaaacca
ggcacacctggttcaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgaccggtttccctggagagaaaggcaaccttggtctagctggtatt
cctggacaagagggacacacaggaccacctggmgctcagggcatcaaaggtgaccacggc
ccccctggtcagcatggtggaactggaccccctggaccccctggagcaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctcttcggtcatgatggtgtgaag
ggtgataagggtttgcctggttctcctggtctggacatgcccggccctcagggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctgggggggcaggccccaagggagagatgggagtcatggga
acacccggaacaccaggatatcagggtccttctgggaaccctggaagttcaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagcctggacccaaaggagag
aggggagaaccaggtctccagggccctgctggcaacatgactgacgttgacatggagcac
atgaagggcgagaaaggagacctcggagatccaggtgacactggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagaccggtaca
cctggtcaaccaggtgataaaggagacacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctgtaggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacacaccggtctgccaggtgttggagtaccaggaccccctggagag
aagggtcagttgggtctgcctggtttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatc
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggccaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagagaaaggagtgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccagggtcatctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtacgccaggcttcgagggttcccatggccagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggcctgccaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgttccaggcagcgtgggggggaag
ggaaacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactgaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtccc
cctggtcctcctggcccccacaccttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctcgggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgacggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacgttgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgttcagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcccttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacacaagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccattgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag

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