Salvelinus sp. IW2-2015 (Arctic char): 111959961
Help
Entry
111959961 CDS
T05762
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
salp01002
]
111959961
Peptidases and inhibitors [BR:
salp01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
111959961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
111959961
NCBI-ProteinID:
XP_023837587
LinkDB
All DBs
Position
LG36:11331789..11360678
Genome browser
AA seq
1344 aa
AA seq
DB search
MLFPTVTWFLLVAGLLGVWAQDYYEERTVNKRPRGRGAQLQAAAIATNVQKHNGQAISDE
DCGLELTFLLDSSESAKENHEQEKRFAMDVVDRLQAARLQTGRSLSWKAALLQYSSHVII
EQTFKQWRGTDNFKSHITPIVYIGHGTYTTYAITNMTKMYLEESSPGNIKVAMLLTDGIS
NPRNPDIISAATDAKNQGVKFFTVGITRAANESANVAQLRLLASSPASRYLHNLQDIDIV
EKVLKEITDLADEGCPPAQQCACEKGERGLSGLAGKKGRPGDDGDPGLKGSKGEGGLSGL
PGQDGREGKSGYKGERGERGECGTPGIKGDRGPEGPMGTRGVRGLQGLPGPQGDVGPEGP
QGKKGDRGPAGPAGIQGENGIGLPGSKGDLGFQGKPGPPGPPGLGEYGQPGPQGPQGFQG
EIGPHGEGLPGPKGDRGLAGPRGPRGQTGAGIKGEKGEFGPPGHPGLVGLTGAGIQGEKG
VEGPRGPPGGRGPQGEGLPGPKGDQGLPGELGATGERGVGEPGPKGELGTSGLAGLPGLP
GEDGAPGQKGEAGVAGIRGPDGAAGIGTQGEKGDQGQRGIRGLHGPPGMTGPSGAKGEPG
TPGRLGMPGLPGRAIAGPKGDLGPPGPSGPTGETGYGLPGPKGDRGNPGPSGPFGPKGEG
FPGPVGPPGLPGLQGEQGPEGVGIPGPKGDIGFRGLPGLPGPKGKGVQGPPGNIGRKGPP
GPNGPPGEGLQGPKGEQGSQGVTGPRGPIGEGFPGGKGDRGLQGERGNKGVKGGMGDSGV
PGESGRPGVKGEAGLTREDIIKLIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIK
DFVTALVDRTTVGRNATRIGLVLYSLDAHLEFNLSRYMTKQDVKQAIRNMSYVGEGTYTS
TAIRKATQEAFYSARTGVRKVAIVITDGQTDKREPVKLDIAVREAHAANIEMYALGIVNI
SDTTQAEFLRELYLIASDPDSEHMYFIDDFNILPALESKLVSQLCEDENGALVLYRNANG
FGRNGNNGHGNNGHGNNGHGNNGXGNNGQGNXGQGNSGHGNNGHGNNEHGNTYNEDPILN
PSGGTSSQSHIRGRGDNFALPLNAGPLPVQVDDEEGEDLDVRTHVRGGSTVAVVNKTVSI
FPARESSHSNTAVSSSSSGSASSSSGTSGSASSSSEGQFQPVSIPIPDSIFPQGYSSSQP
SGKEATQQPQTETSWAEVIDGLPLDFHQMFDELAARKEDMVIVEEEDDSILHIFCDKDDE
EAQTSRPSSTLAPLSQLGKVYVSATNSVRALNNTTLLMPYQGELLDEMVNLNGFGHVQPS
CLGTQLSANPAACLGALSIAVNAP
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgctgttccctactgtgacctggttcctgttggtagcagggctgttgggtgtctgggct
caggactactatgaagagagaacagtgaacaagagacccaggggcaggggggcccaactg
caagctgcagccattgcaactaacgtgcaaaaacataacggacaagccatttcagatgag
gactgcggtctggagcttacctttctgctggacagctctgagagtgccaaggagaaccat
gagcaggagaagcgctttgccatggatgtggtggacaggctccaggccgcccgtctgcag
acgggccgcagtctgagctggaaggcggccctgctgcagtacagcagtcacgtcatcatc
gagcagaccttcaagcagtggagaggcactgacaacttcaagtcccacatcacccccatt
gtctacatcggccacggcacctacaccacctacgccatcaccaacatgaccaagatgtac
ctggaggartccagcccaggcaacatcaaggtggccatgctgctcactgacggcatctcc
aaccccaggaacccagacatcatctcagctgccactgacgccaagaaccagggggttaag
ttcttcacggtgggcatcacccgtgcagccaacgagtcagccaacgtggcccagctgcgt
ttgttggccagttctcctgcctcccgatacctccacaacctgcaggatattgacattgtg
gagaaagtcctcaaagaaattactgacctggctgatgaagggtgtcccccggcccaacaa
tgtgcctgtgagaagggcgaaagaggactcagtggcttagccgggaagaagggtcgccca
ggagatgatggagaccctggtcttaaaggatcgaagggagagggaggactaagtggactt
ccaggtcaggatggcagagaaggaaaatctggttacaaaggagagaggggtgagagaggc
gagtgtggcactccaggaattaaaggggacaggggtcctgagggcccaatgggcaccaga
ggagtcagaggtctccagggtttacccggtccacagggtgacgttggacctgagggccct
cagggaaagaagggtgaccggggtcccgctggcccggccggaattcagggagaaaatggt
attggacttcctggatctaagggtgatctgggattccaggggaaacccggcccccctggt
ccaccagggttgggtgaatatggccagccagggcctcaagggccacaaggttttcaagga
gagataggaccccacggagagggtctccctgggccaaagggagaccgggggctggccgga
ccgagggggccaagaggacagacgggtgcaggaatcaaaggagaaaagggtgagttcggg
cctccaggtcatccaggacttgttggacttacaggagcgggcatccagggggagaaggga
gtggagggtcccagaggtccacctggtggcagaggacctcaaggagagggcttacctgga
cctaagggtgatcaaggtttaccaggagagctcggagctacaggggagagaggcgttggt
gagccagggccaaagggtgagcttggtacatctggcctggctggcttacctggtcttcca
ggcgaggacggggctccaggacagaagggtgaggcgggtgtagctggtataagaggtcct
gatggagcagcagggatcggcacccagggcgagaagggagaccagggtcagaggggcatc
cgtggattacatggacctcctggcatgaccggaccctcaggggcaaagggggagcctggc
acaccaggccgactgggcatgccaggactaccgggacgggccattgcaggtcccaagggt
gatctaggcccacctggtccctctgggccgactggagagacaggctatgggctacctggg
ccaaagggtgatcgtggtaatcctggtccatcaggaccttttgggcccaaaggtgaaggt
ttccctggtccagtgggtcctccaggccttccaggtctacagggagagcagggccctgag
ggcgttggcatcccaggacctaagggagacattggcttcagaggattgccaggtttgcca
ggcccaaaaggaaagggtgtgcaaggaccaccgggtaacattggaaggaaaggaccccct
ggtccaaatgggcccccgggggaaggtctgcagggccccaagggtgagcaggggtctcag
ggtgtgacagggccaaggggacccataggggaaggattcccaggaggtaagggtgaccgt
ggcttgcagggtgagagaggaaataagggtgtaaaggggggcatgggagattctggggtt
cctggagagtctgggaggccaggagtaaagggtgaagcagggcttacaagagaagacatc
attaaattgatcaaggaaatatgtggatgtggaatcaagtgcaaggagaggccaatggag
cttgtattcgtcattgacagctcagagagtgttggtccggaaaactttgaaatcatcaag
gacttcgtcacagcgctggtggaccgtaccactgttggacgtaacgccaccagaattgga
ctggttctgtacagtctggatgcccacctggagttcaatctgtcgcgctacatgaccaaa
caagatgtcaagcaggccatcaggaacatgtcctacgtgggtgagggaacctatactagc
accgccatccggaaggctacccaggaggccttctacagtgcccgtactggggttaggaaa
gtggccattgttatcacagatggacagacagacaaacgagagcctgtgaagctagacatt
gctgtgagggaggcccatgctgccaacattgagatgtatgccctggggattgtcaacatc
tcagatacaacccaggccgaattcctgcgtgaactatatctgatcgcctcggacccygac
agtgaacatatgtatttcatcgacgatttcaacattctaccagctctggagtcaaaactt
gttagccagttatgtgaggatgagaatggagcccttgtgttgtatcgcaacgctaatggc
tttggaaggaatgggaacaacggtcatgggaacaacggtcatgggaacaacggtcatggg
aacaacggwcakgggaacaacggacaggggaacarcggacaggggaacagcggacatggg
aataacggacatgggaataacgaacatggaaacacctataatgaggatcctatcctaaat
ccaagtggaggcaccagttcccagagtcacatcagaggccgtggagataactttgctctg
cccctcaatgctggaccactcccagtgcaggtggatgatgaagagggtgaagatttagac
gtaaggacccacgtgcgaggaggtagtactgtggctgtagttaacaaaacagtatccatc
ttccctgcaagggaaagctcccactccaacacagctgtctcatcatcatcatcaggatct
gcatcatcatcctcaggaacatcaggttcagcttcatcatccagcgagggccaatttcag
cctgtatcaattcctatccctgattctattttcccccaaggctattcttcctcccagcct
tcgggcaaagaggccacccaacaaccccaaaccgagaccagctgggccgaggttatagac
ggtctccccctagatttccaccagatgttcgacgaactagcagcaaggaaggaagacatg
gtgattgtagaggaggaggacgacagtattctgcacatcttctgcgacaaggatgatgaa
gaagctcagacctcgaggccttctagcacacttgcccccctctcccagcttggaaaggtg
tatgtgtccgcaacaaactcagttagggcaytgaacaacaccactctactgatgccatat
cagggagagctgctggatgagatggtcaaccttaatggatttgggcatgtccaacccagc
tgtctgggaacccagctgtctgccaacccagctgcctgcctaggggcgctatccatagct
gtgaatgcgccatga
DBGET
integrated database retrieval system