Salvelinus sp. IW2-2015 (Arctic char): 111960057
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Entry
111960057 CDS
T05762
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111960057 (col25a1)
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111960057 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111960057
NCBI-ProteinID:
XP_023837715
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All DBs
Position
LG37:complement(19133515..19527944)
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AA seq
678 aa
AA seq
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MERETTSLKQQYCCTTVMNVISSLFSLASLAFCILLSVQTSAITDRVLDLETGHGEQIFH
RVPSFSVDQFNSLIQERVDELLSQRSYENLSKIRIARQVSHTPDCNCPPGPPGKRGRRGR
NGEPGPPGPPGLQGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGSAGPPGP
PGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGTPGELGLMGPEGPPGQKGSLGPPGIPGV
DGLKGEMGERGEKGDMGEDGHKGEVGEKGDAGSSAAGIKGEPGESGRGGSKGEPGLPGLP
GLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELGPPGKGERGETGQAGQKGGPGEAGNPG
TRGSKGETGDKGDLGSMGPRGPPGQKGDQGATEIIDYNGNIQEALQKITTITVTGPPGPP
GLSGPAGIKGDQGMPGLPGLDGESGFKGSKGDMGIPGTSGDKGTVGLSGSPGVNGLKGDK
GDSGLPGPEGPSIVGQPGAPGPHGLPGPMGPHGFPGPKGEAGNHGLKGVRGESGHKGDRG
PLGLPGASGLDSKPGIRGMDGPVGPSGPAGPKGDRGERGAAGELGPRGPYGLPGAAGTPG
LDGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGFRGFKGEKGEPGQPGLDGLDAPCQLGPD
GLPMPGCWQKGVTPWLVA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaaacgacatctttgaagcagcaatattgctgcacaacagttatgaacgtt
atctcgtctttattctctctagcgtcccttgccttttgcatattattaagtgtacaaaca
tcagcgatcacggacagggtcctggatttggaaactggacatggcgagcaaatctttcac
agggtccccagtttttctgtggatcagtttaattcattgattcaagagagagtggatgag
ctcctgtcacagcgctcctatgaaaatttatcgaagatacggattgcccgacaagttagc
catactcctgattgcaactgtcccccaggcccgccaggaaagcggggaagaagaggccgg
aatggtgaacctggacctcctggtcctcctggtctacagggtgacaagggggatcaaggc
gaccaaggaccgcggatggtcttccctaagatcaatcatggctttctttctgctgaccag
cagctcataaagcggcggcttattaagggagatcagggttcggcaggtccaccagggcct
cctggacccccaggtccccctggcccccgagggccaccaggggacacaggcaaggatggg
ccccggggagtgccaggtctgccgggagatcccgggaccccaggagagctaggactaatg
ggacctgaggggccaccaggacaaaagggttccctcggacctcctggcatcccaggtgtt
gatgggctgaagggtgaaatgggagagcgaggtgaaaagggtgacatgggagaagatggg
cataaaggtgaagtcggggagaagggtgatgcaggctcctctgctgcaggcattaagggt
gaaccaggagagtcaggacgtgggggatcaaagggagagccaggacttccagggctgcct
ggacttcccgggattaagggtgagcctggattcctaggacctcagggagaaccggggctc
ccaggactaccaggaaccaagggcgagcgaggggaacttggcccaccaggcaagggagag
cggggcgagactggacaggccggtcaaaagggagggccaggagaggcagggaacccaggc
actagaggttcaaagggagagacaggagacaagggagacctgggctctatgggaccaagg
ggaccccctgggcagaaaggtgaccaaggagccacagaaatcattgattacaacgggaac
atccaagaagctttacagaagattaccactattacagtgacgggtccccctgggcctcct
ggactatcaggaccagcgggaatcaagggagatcaaggcatgcctggcctccctggactg
gacggtgaaagcggtttcaaaggttccaaaggagacatgggaatccctggcacatctgga
gataaaggaactgttggcttatctggttcaccaggcgtcaatggattgaaaggagataag
ggtgattctggtctgcctggtcctgaagggccctcaattgttggccaacctggagcacct
gggccccatggactcccaggccccatgggaccccatggcttccctggaccaaagggggag
gctgggaatcatggtctgaagggagtacgcggggagtcagggcacaagggggacagagga
cctctgggcctccccggagcctccggcttggacagcaagcctggaattaggggtatggac
gggcctgttggtccctccggtccagccgggccaaagggggacagaggtgagagaggagct
gcaggtgaactcgggccaaggggaccttatggacttcctggagcggctggaacacctggc
cttgatggggagaagggaaagaaggggaaaaaggggcctaagggggagaaaggagaacag
ggtgcccctggattagatgcaccctgcccattggggttccggggctttaagggtgaaaag
ggagaaccggggcaacctggtctggatgggctggatgccccgtgccaattgggcccagac
ggactaccaatgcctggttgttggcaaaagggagtcacgccttggctggtggcttga
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