Salvelinus sp. IW2-2015 (Arctic char): 111960317
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Entry
111960317 CDS
T05762
Name
(RefSeq) protein transport protein Sec24D
KO
K14007
protein transport protein SEC24
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111960317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111960317
Membrane trafficking [BR:
salp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
111960317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
GDP_Man_Dehyd
Motif
Other DBs
NCBI-GeneID:
111960317
NCBI-ProteinID:
XP_023838048
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Position
LG37:8668328..8708472
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AA seq
1038 aa
AA seq
DB search
MSQQGYVATPPYSQAQPGMGGYPAGFGSAPAQPLYRHYGGPPQSFPAPPTGMMKPVSSPS
GMPPPQVPSHYGSNGQQNGAHPQSYPAPPYGQPLQSPYHSMAHQGPPPAQQLTNQMGAMN
LGYGPGPMQSPQAPPTSPLTQQQFQTAPPPAMGHPPLGPHSSQMAPPQSPLAGPTMAGPQ
SMGGPPPMGGMGRPFPGPPPPGAGGFQQPGPGAAGPPGHPQQLQGQFGGQMAGPGMAGPG
MAGPGMAGPFQGGAAQMAGPPQKKLDPDSIPSTTQVIEDDQAKRGGQVYTTNLRGQVPPL
VTTDYTVQDQGNASPRFMRCTTYSFPCTADLAKQCQVPLATIIKPFATVPKNETPMYVVN
HGETGPIRCNRCKAYMCPYMQFMDGGRRYQCGFCNCVNEVPAFYFQHLDHMGRRVDFYER
PELSLGSYEFAATLDYCKNNKPASPPAYIFMIDVSYANIKSGLVRLVCDELKTLLDNLPR
EDGAESSMLKVGFVTYNKILHFYNVKSALAQPQMMVVSDTAEMFVPLLDGFLVNFQESRA
VINNLLDQIPDMFADTNESETVFAPVIQAGVEALKAAECSGKLFIFHSSIPTAEAPGKLK
NRDDKKLINTEKEKTLFQPQKAVYEQLSKDCVSQGCSVDLFLFPSQYVDIATMGDVATHT
GGSVFKYSNFQMERDGQHFLSDLRKDVEKAIGFDAIMRVRTSTGFRATDFFGAIHMNNTT
DVEMAAVDCDKAVTVEFKHDDTLSEETGALMQCALLYTTISGQRRLRIHNLSLNCSAQLS
ELYKSCETDALINFFAKSAYRAMLNQPLKTVKEILVNQAAHMLACYRKNCASPSAASQLI
LPDAMKVFPVYLNSLLKTGPLVGSAELSTDDRAHQRLSTTAMGVEDTQLLLYPRLIPLHN
MDVASDVVPTPVRCSEERLTDAGMLLLENGCSLFLWLGQACPPEMIQSIFNVPSLAHVPV
DLRSLPELDNPQSKKLRSIVDSLLDQRPSSMKLMIVKQKDQSEIMFRQHLVEDKGLHGGA
SYMDFLCFVHREIRQVLT
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcagggttatgttgccacacctccctattcccaggcccagcctgggatggga
ggctacccagccgggtttgggagcgcgcctgcccagcccctctatagacactatggggga
ccacctcaatcattccccgccccaccaacaggtatgatgaagcctgtgtcgtccccttcc
gggatgcctccgccacaggtccccagtcattacggctcaaacggccagcagaacggagct
caccctcaaagctaccctgcccctccatatggacagccacttcaatccccctaccacagc
atggcccaccagggcccgcccccagcacagcagctcaccaatcagatgggtgccatgaac
ctcggatatggtccagggcccatgcagagccctcaggcacctcccacctctcccctaacc
cagcagcaattccagactgcccctcccccagctatgggacacccacccctgggcccccac
tcatctcagatggctcccccacaatcacccctagctggtccaactatggcagggccccaa
tctatgggtggccccccacccatgggaggcatgggtaggcccttccctggcccaccccct
ccaggtgctgggggcttccagcagcctgggcctggagctgccggaccaccaggacatcct
cagcaactacaaggtcaatttggggggcagatggcgggacccgggatggcgggacccggg
atggcgggacccgggatggcgggacccttccaaggtggggcagcccaaatggccggccca
cctcagaaaaagctggatcctgactccatccctagcacaacacaagtcatcgaggacgac
caagccaaacgagggggacaggtgtacactacgaacctcaggggccaggtgcccccgctg
gtcaccactgactatacagtacaggaccaaggaaacgccagtccaaggttcatgcgttgc
accacctactctttcccctgcacggctgacctggctaagcagtgccaagttcccctggcc
acaatcatcaaacccttcgccacagtgccaaagaatgagactcctatgtacgtcgtgaac
catggtgagactggcccaatccgctgtaaccgctgcaaggcctacatgtgtccctacatg
cagttcatggacggcggccgccgctaccagtgtggcttctgcaactgcgtcaacgaagtg
ccagcattttatttccaacacctggaccacatgggcagaagggtggacttctacgagagg
ccagagctgtcgctggggtcctacgagttcgccgccaccctggattattgcaagaacaac
aagccagccagtcctccagcgtacatcttcatgatcgacgtgtcctatgccaacatcaag
agcggactggtcagactggtgtgtgatgagctgaagaccctgctagacaacctgcccaga
gaggatggtgctgagagctcgatgttgaaggtgggcttcgtcacctacaacaagatccta
catttctacaacgtgaagagtgccctggcccagccccagatgatggtagtatccgacacg
gcagagatgttcgtcccgctgctcgacggcttccttgtcaacttccaggagtcgcgggca
gtcatcaacaatctcctggaccagatccctgatatgtttgccgacaccaatgagagcgag
acggtctttgcccccgtcatccaggctggggtagaggcactgaaggcagcagaatgcagc
ggcaagctgttcatcttccactcctccatccccaccgccgaggcccctgggaaactgaag
aacagggacgacaagaagttgattaacacagagaaagagaagactctgttccagccccag
aaggctgtctacgagcagctgtccaaggactgtgtgtctcagggctgcagcgtggacctc
ttcctcttccccagccagtacgtggacatcgccaccatgggagacgttgccacacacaca
ggaggctccgtcttcaagtacagcaacttccagatggaaagggatggacagcatttcctg
agtgacctgaggaaggatgtggagaaggccatcgggtttgatgccatcatgagagtccgc
accagcacaggcttcagggctacagacttctttggtgccatccacatgaacaacaccaca
gacgtggagatggctgccgtggactgtgacaaggctgtgacggtggagttcaaacacgat
gacacacttagcgaggagacgggcgctctcatgcagtgtgcattgctgtacacgaccatc
agcggccagcggcgtctgcggatccacaacctcagtctgaactgcagcgcccagctgtct
gagctctacaagagctgtgagacggacgccctcatcaacttcttcgccaagtcagcatac
cgtgccatgctgaaccagcccctgaagacggtgaaggagatcctggtcaaccaggcggcc
cacatgctggcctgctacaggaaaaactgtgccagtccctccgctgccagccagctgatc
ctgcctgatgccatgaaggtgtttccggtttacttaaacagcctgttgaagactggtccc
ctggtgggcagcgctgagctctctacagatgacagggctcaccagagactcagcaccaca
gccatgggggtggaggatacccagctgctgctctatccacgccttatcccactgcacaac
atggacgttgccagtgacgtggtgccaactccggtgcgctgctctgaagagcgcctgaca
gatgcaggcatgttrctgctggagaatgggtgctccctcttcctgtggctgggtcaggcc
tgccccccagagatgatccagagcatcttcaacgtgccctccctcgcscatgtgcccgtt
gacctgaggtccctaccagagctggataacccccagtctaagaagctgcgctccatcgtt
gactccttgcttgaccagaggcccagctccatgaagctcatgattgtgaagcagaaggac
cagtctgagattatgttccgccagcacctggtagaggacaaggggctccacggtggagcc
tcctacatggacttcctgtgcttcgtccaccgcgagatcagacaagtcctcacttaa
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