Salvelinus sp. IW2-2015 (Arctic char): 111960434
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Entry
111960434 CDS
T05762
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111960434 (frem1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
111960434
NCBI-ProteinID:
XP_023838193
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All DBs
Position
LG37:complement(9860959..9890371)
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AA seq
2200 aa
AA seq
DB search
MGLQRXALRRALPWLLLLVVAGGSHGSLVKTNLGLRVKRGQSAYLQEGDLQFHIPRVKDA
CKVEVVLNEPITQRVGTLTPQVFDCHYLXDDVKYVHNGCPILKEDTVKLRLYRFTETETF
TEVFFLRVEIMEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECSIRVNT
HETHLPGHGQLVIGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLKGLKLAKVTK
VPCDEFLVMGLRYQHIDPPSPDVDYIALRLDLTDTRSGSIYQSERAWIPVHILGAVPNQP
PKPAFMSMFILEVDQFILTPLSTATLDAEDGETPKQLLVFNITKPPLEGFITHLSDHTRP
IFSFTWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSTPIMVHMSVRTADTNAP
RVSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTVA
DILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSE
GHTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGLTGYPVSRFLQKDLFHS
VVYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVIVVHINPVPDQPPKEVPGVTRCLVVK
ETEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGGHDAGRLFLVDSIAKFTKDPE
APVLRLFTQHAVNYMKVAYMPPILDIGPYPQHIQLVLSVTNQQGTTVAGICFNITVVPVD
NLAPEVHMKPLTVDEGGECWVGPDHLLLTDHDSTEESLRVELKREPWHGAVQLDGFSMKP
GQNFTVRDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPG
LKPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYHGVVRKNAIVVDRFIQADI
VAGSITYEHTGAEIGLAPRHDTITFVISDGQTENVPSCCKDRGDTLKRGRAQVQESLPLY
DLKVTVFPVDSQMPSIATGDVFVVDEGGVAPITIAHLSASDVDTPLEELVISLVSPPQYG
YIENILPSPGFEKSNTGISIASFSYSDIMNGHVNYVQSRHQRIEPTADQFMLCVSDGKHT
SAHVHFYIIINPINDEVPEFLARNITVREGHMKELDPAVINAVDLDVPKNNLLFSVVQAP
QHGTIMGRTYGNDVPANGRPVNRHRDAEVLVQDFTMQELRNGMSLMYMHDDSENMVDSFT
IHLTDGKHQLQRHVMVNVLPVNDEEPRVIRNNGMEVEAGEARLISSANLFAQDSDTTSQE
IVYMLESVPTQGLLQVKVGSDWVTQSAGMNCTQETLDMNLLRYLHTGPLGHTQDFFVFHL
LDGKNRSPAQHFHISLKDMEKGNIGIFVKPVKTSRGERVVLTTDVLLATDGTDKPEELFY
IVTVPPGNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATASLETLQFVVSNGKATR
NGTLEIYVETTDRVLPSLTCNSGLRIPQDSSMAVTPDALALSDPDTPPSDLLFFLAQPPQ
YGTLLRGGVPLAAGGNFTQWDLQELEVTYRHGGGPSQIDRFAFTASDTTNRSFLLEGRVQ
TEPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSSRELRAQDGNTKDEDLSF
HIHRPPYFGYLENTIKGSFIQKRFTQRDLSKRTIVYIIDPATEALSDSLEFRVSDPLGNT
GPSHTLELKWSRVELAVSEYQACEDQGTVSLDVLRKGNMAESSYITIKVREVTATAGKDF
TLSPSSLIQFDPGVSKRSWRIEITQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDS
GKGQCGSSQATMGSSLGGKQVQSGPYRQHGSIHLETLPLAKGDQQMTWTRGDGVPQSVPA
AVPATPNMKLRAMANRKTIPPSSVHRNGTDTVFTYHGIMSVRLEDDKSPSRKGRKANIQV
TSRERQQHAATAPPVAPNNPKPVPKTKSDSLLPHTMSEQPNKEASPSSGPKPCVPELMGL
LHFNQSSGGLLHCNGVSWKPWAPTDEMVSAQNCRKGWTYHSGYCYFLSTEHKSSWSTAIR
ACRESHQANLVSVSSKADMDWLWDFSGRKPFWIGLNDRESRGRWEWVGGEPITYTNWRKS
PARGKRKGTRRCVLVWRRAKWQIRDCKTGRGHLYMCYIKT
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacaaagagkggcactgcgacgggcacttccctggctgctgctgctagttgtg
gctggagggtcacacggctccctggtgaagactaacctagggttgagggtgaagaggggc
cagtcggcytacctgcaggagggggacctgcagttccacatcccccgggtgaaggacgcc
tgcaaggtggaagtggtgctcaacgagccaattacgcagagggtggggacgctgacacct
caggtatttgactgccactacctggytgatgacgtaaagtatgttcacaatggctgcccg
atactaaaagaagatactgtcaagctacgactctacaggttcacagagacagagaccttt
acggaggtcttcttcctgcgtgtggagatcatggaacccgactgcaacatcatcaaacta
gggcccaagtccctggtggtgccagagttctacggcctgtccgacacgctggatggcaac
gtggtgtccttccactatgagaggatgaccagtcttgagtgtagcatccgtgtgaacacc
catgagacacacctcccgggtcatggtcagttggtcattggggagccagaccagctggag
gccagaggggacgagccggagagcttcattcctctccggcagcagctagataacaaggcc
agggccatgtgtaagactgaggactgcctgaagggcctgaagctggcaaaggttacyaaa
gtgccctgtgatgagttcctggtgatgggcctgaggtaccagcacatagacccaccgtct
ccagacgtagactacatcgccctccgactggacctcaccgacaccaggagcgggagcata
taccagtcggagcgggcctggatacctgtccacatccttggcgctgttcccaaccagccg
cccaagccagccttcatgtccatgtttatcctggaagtggaccaattcatcctcacgccc
ctctccaccgccaccctggacgcagaggacggagagacccccaaacagctgctggtgttc
aacatcaccaagccccccctagagggcttcatcacccacctgtcagaccacacgcgaccc
atcttctccttcacctgggtggacctcaacgacatgcttatcggctaccagccacccaac
tcctcccacacccagcgtaggaactatgaggtggagtttgaggtacatgacttcttcttt
gagaagagcaccccgatcatggtccacatgtcagttagaacagcagacaccaatgcaccc
agggtgtcatggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacgtgg
gatcagctccagattgtggacaacgacaacttcaaggctgtacgcatcatcactgtcgac
ggcctccagcatggcaggctaacactgagaggtggcaagggtttcatgttcaccgtcgcc
gacatcctcgcgggcgccgtgcgctaccatcacgacgacagcgacaccaccaaggacttc
atcatcttccgcatcaccgatgggcgccaccagacccggcataagttccccatcaacatc
ctgcccaaggatgacagcccaccattcctcatcaccaacacagtgctggagctgtctgag
ggccacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagcgac
gactacatcctgttcaacatcacccggccaccgcaagctggagagctcatgaagatccct
ggtcctggactcaccggttatcctgtcagccgtttcctgcagaaggacctgttccactct
gtggtctactaccgccatctagggaatgaggtgtttgatgactccttcgaagtggtgctc
tcggacttccatgacccaccaaacctttcagaacctcaggtcatagtggtgcacatcaac
cctgtgcctgaccagccacctaaagaggttcctggggtgactcggtgcctggtggtcaaa
gagacagaggtggtccacctgaccaagaagcagcttcacttcatcgatctggagtcccct
gacagcgagctcacatacactgttaccactccgcccttctacagcaggtcttatgggggc
catgatgcagggaggctgttcctggttgacagcattgccaagttcaccaaggatcctgaa
gctccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatg
cctcccatcctggacattgggccttacccgcagcacatccagttggtgctctccgtcacc
aaccagcagggaaccacagtcgctggcatctgcttcaacattactgtggtgccagtggac
aacctggccccagaggtgcacatgaaacctctgacagtggacgagggtggggagtgctgg
gtgggtccggaccacctgctgctgacagaccatgactctacagaggagagcctgagagtg
gagctgaagagagagccttggcacggagctgttcagctggatggcttctccatgaaaccg
ggccagaacttcactgttcgcgacctgaaaagcctaaaagttagatatcatcacgacagc
tcggaaacagtgggagatgccattgaattaatcgctaccgatgggattaacgcaatcaac
tttgttctggaagttaaggtgacactgatcaatgatgaggttccagttctcatgccaggt
ctgaaacctgttctggactgtgcagagggacaggaagtcatcatcaccgctgagtacatc
tatgccacagacgcagacagtgacgacaacagtctgacctacatgattgcccgccagcca
taccatggcgtggtgcgcaaaaacgccattgtggtcgatcgcttcattcaggcagacatt
gtcgcagggagtatcacctacgaacacacaggagcggagattggactagcccctcgacac
gacacaattacgtttgtgatatccgacggccagacggagaatgttccgtcatgctgtaag
gaccgaggggacacattgaaaagaggcagggcacaagtccaggagagcctgcctctgtat
gacctgaaggtcaccgtgttccctgtggacagtcagatgccttctattgcaacaggagat
gtgtttgtggtggatgagggaggtgtggcccctataactatagcccacctcagtgcctcg
gatgtggacactcccctggaggagctggtgatcagcctggtctctcctccccagtatggc
tacattgagaatatcctgcccagtcctggatttgagaaaagcaacacaggcatcagcatc
gcctccttctcttacagtgacatcatgaacggacatgtgaactatgtccagtccagacac
cagaggatcgagccaaccgctgaccagttcatgctctgtgtctctgacgggaaacacacc
tctgcccacgtccacttctacatcatcatcaaccccatcaatgacgaggtcccggagttt
ctcgccagaaatatcacggtgcgagagggccatatgaaggagctggaccctgctgttata
aacgcggtggatctggacgtccctaagaacaacctgctgttcagcgtggtccaggccccc
cagcatggcaccatcatgggccgaacgtatggcaacgacgtgcccgccaatggaagaccc
gtcaacaggcacagggacgcagaggtgctggtccaggacttcaccatgcaggagttgagg
aatggtatgtctctgatgtacatgcacgatgactctgagaacatggtggacagcttcacc
atccatctgaccgatgggaaacaccagctccagaggcacgtgatggtcaacgtactcccc
gtcaatgatgaggagcctcgagtcataaggaacaatggaatggaggtggaggcaggcgag
gctaggctgatctccagtgctaatctctttgctcaggacagcgacactacctctcaggag
atagtctacatgttggagagtgttcccactcagggactgctacaggttaaggtaggctct
gactgggtgacccagtctgcggggatgaactgcacccaggagacattggacatgaacctg
ctgcgctacctccatacggggccactgggacacacacaggatttctttgtgttccacctg
ctggacgggaagaaccgctcccccgcgcagcacttccacatctccctcaaggacatggag
aaaggaaacattggcatttttgtgaagccggtgaagaccagccgcggtgagcgcgtggtt
ctgaccacagacgtcttgctggcgacggacggtacagacaaacccgaggagctgttctac
attgttacagtcccccccggcaacggccacatggagtacatcaaacaccccggggtggcc
atcagcaccttcagccagatggacatcgctgccaacctggtgggctacgtccatgacaac
agagccaccgcgtcgctagagacactacagttcgtcgtcagcaacggcaaggccacccgt
aacggcaccctggagatttacgttgagaccaccgaccgcgtgctgccatcactgacctgt
aacagcggcttgagaatccctcaggactcctccatggcggtgacccctgacgccctcgcc
ttgtccgaccccgacaccccacccagtgacctgctcttctttctggcccagcctccgcag
tacggcaccctgctccggggcggtgtcccgctcgctgccgggggtaactttacccagtgg
gacctgcaggagctggaggtgacctacaggcacgggggcggcccgtcgcagatcgaccgc
tttgccttcacggcctcagacactaccaacaggagtttcctgctggaggggagggtacag
acggaacctgttatctttaccattcagattgagcctttggacagctcggctcctgaggtt
gtgcagctacagtctctgtggaaggctgaagtcctgtctgacggtcgatatgggatctac
ctctcgtcccgggagctgagagcgcaggacggcaacaccaaggacgaagacctctccttc
cacatccacagaccaccatactttggctacctggagaatacgattaaaggcagctttatc
cagaagcgtttcactcagagggacctgagcaaaaggactatcgtgtatatcatagaccca
gcgacagaagccctgtcagacagcctggagttcagagtgtcagaccctctggggaacact
gggccctcccacacactggaactgaagtggtctcgtgtggagctggctgtgtctgagtac
caggcatgtgaggaccagggcactgtctcactggacgtcctacggaaaggcaacatggcc
gagtcctcgtacatcaccatcaaggtgagagaggtcacagcgactgctggaaaggatttc
actctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgt
attgaaattacccaagatcacctggaggaggcagaggagacatttgaagtgacactggtg
tcccctgagggaaccgtagtaggcagcacctccaaagcgctggttaaaatcaaggactct
gggaaaggacagtgtggatccagtcaggccactatgggctccagtctgggggggaagcag
gttcagtcagggccctaccgccaacatggctccattcatttggagacactaccccttgcc
aagggagaccagcagatgacctggacccgaggcgatggtgtgccccagtctgtgcccgct
gctgtgcccgccacgcccaatatgaaacttagagccatggccaatagaaagacaattcca
ccatcgtcagtccatcgtaatggaacagacactgtgttcacgtaccacgggatcatgtcc
gtgcgcctggaggatgacaagtctccgtctaggaagggaaggaaggctaatattcaggtg
accagcagagagcggcagcaacatgcagcaacagcaccaccagtggctcccaacaaccct
aaacctgtccctaagacgaagagtgacagcttgctcccacatacaatgtctgagcagccc
aataaggaggcttcacctagctctggccctaaaccctgtgtcccagagctgatggggctc
ctacactttaaccagagctcaggcgggctcctccactgcaacggggtctcctggaagccc
tgggctcccactgatgagatggtcagtgctcagaattgtcgtaagggctggacctatcac
agcggctactgctacttcctgagcaccgagcacaagtcgtcgtggagcaccgccatcagg
gcatgcagggagagtcaccaagccaatctggtgagcgtttcttccaaggctgacatggac
tggctgtgggacttcagtggaaggaagccattctggataggtctaaacgacagggagagc
cgaggacgctgggaatgggtgggtggagaaccaatcacctacaccaactggaggaagagc
ccggccagrggcaagaggaaggggaccaggaggtgtgttctggtgtggaggagggccaaa
tggcagatcagagactgtaagacgggcaggggacatctctacatgtgttacatcaagacg
tga
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