Salvelinus sp. IW2-2015 (Arctic char): 111960646
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Entry
111960646 CDS
T05762
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111960646
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111960646
09142 Cell motility
04820 Cytoskeleton in muscle cells
111960646
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111960646
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111960646
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111960646
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111960646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111960646
NCBI-ProteinID:
XP_023838520
LinkDB
All DBs
Position
LG4p:complement(18498320..18613436)
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AA seq
1669 aa
AA seq
DB search
MTDFLTFPALLLSVLLLLLSGIITPAYTDDACSCTGKSRCHCDGVKGSKGEPGYPGYDGL
PGVVGYPGFEGNPGPFGPKGNLGFPGLSGPKGSRGLPGKPGFSGPPGQPGIPGNEGPMGP
SGIPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHIGPQGRDG
GKGQRGLPGLPGLPGLEGPSGTPGLPGLTGVQGEKGQEGPSPVIPGPRGQEGDQGPPGRP
GQKGIKLYAEGPKELKGEPGETGEKGCTGQHGFPGRXGYKGDKGDEGEPGALGKPGKDGN
PGTYGIQGEKGDVGYQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRVKGLQGFPGPLGPP
GYTGNQGVIGFPGMKGEPGLFFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGK
DGPIGDRGPPGFPDLLRGNPGPPGPKGIKGIPGQPGNSGGFGETGEKGDVCRLCMPTNMR
PGPPGPAGEPGRPGETGRDGDPGSKGFRGVKGLGGPPGPQGPYGLPGVPGSPGPKGDKSP
MSPGDRGPVGAPGAPGVPGSDGTDGVPGYPGLKGQPGLKGNPGPPGPKGDRSDAGSQGIR
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETITTTGDPGLKGEK
GHQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGPAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRPGPPGEDGSLGLTGDSGLPGLGRLPGLPGRD
GPQGDRGSKGAEGLPGLPGDPGACTQGIPGPPGAVGLNGIIGFTGTRGQKGAQGDSGLPG
RGAPGLMGPFGRPGFDGPPGPGGAAGLKGFRGRDGVPGTPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGLMGADGVKGRVGVRGPVGDSGAPGDIGVTTYIEVLGDPGDPGPTVPRGL
TGAKGDLGVIGHNGASGKDGIPGSVGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRRGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNSGCHGQNGLQGSPGLA
GDPGSAGPRGAQGRDGIPGPAGEKGDMGAPGIGPKGTDGKMGQSGLKGDAGIPGRFGPPG
PSGPLGDVGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGLEGRPGNDGTPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCPGQKGLPGAPGPKGNDDHIVVTLIPGEQGLPGDLGGRGERGPTGAQGRNGPP
GLPGPKGVLGLDGPVGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFAGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGDSLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgacagactttctcacttttcccgcactgctcctgagcgttctgttgctactgctcagc
ggcatcatcacacctgcatacacagatgatgcgtgcagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttatgatgggttg
cctggagtggttggttatccaggttttgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctccctgggaaacct
gggttctctggaccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcaggaatcccagggtgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgtccatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatattggaccacaagggagagatggt
ggcaagggtcagcgagggttacctggactgccgggtcttcctgggctggagggaccgagc
gggactccaggattacctgggttaacgggtgtacaaggagagaagggtcaggaaggtcca
agccctgtaattccaggcccaagaggtcaagagggtgaccaaggccctcccgggagacct
ggacagaagggcataaagctgtatgcagagggtcccaaggaactgaagggggagccaggt
gaaacaggagagaaggggtgtacaggccagcatggtttccctgggcgtcktggatataaa
ggggacaaaggcgacgaaggagaacctggggctctggggaaacctgggaaagatgggaac
cctgggacctatggaattcagggtgagaaaggtgatgtgggctaccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcagatcaatgggagagtcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatactggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tttttccctggggcccctgggaatcctgggccccctggtttagctggggataaaggggag
aggggggaacccgccccctacataattggcccccctggacccactgggccccctggaaaa
gatggccccataggcgaccgtggtccccctggatttccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggaaatagtggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgcccactaatatgagg
cctggaccaccaggacctgccggagagcctggtaggcctggagagacaggtcgagatggt
gatcctggatccaaaggatttagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctccaggacccaagggggacaaaagtccc
atgtccccaggagacagggggcctgttggcgcacctggggctccaggagttcctgggagc
gatgggactgacggggtccccggatacccaggactgaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggagcgatgccggctctcagggtatacgt
ggacggacaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcaacctgggggtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcgggtgagacgataacaaccacaggagacccaggactgaagggagagaag
ggtcatcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaacttcggcgccaagggggatagaggtctgtctgtccggggccctcctggcaac
actgggcctaaaggtgagaagggccagccgggacctgctggtgccccagggattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtctgcctgggcttggtagattacctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgccgggtctgcctggggat
cctggagcgtgtacgcaaggcattccaggccctccgggggctgtaggtctcaatggaatc
attggcttcacagggaccagaggacagaagggggcgcagggcgattcaggtctgcctggc
agaggggccccaggattgatggggccgtttggacggcccgggtttgatgggcccccggga
cctgggggggctgccggcctgaaaggattcagaggaagagatggtgttcctgggacacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtctgatgggtgctgatggtgtgaagggc
cgtgtaggagtcaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccttggggaccctggggacccaggacctacagttccaaggggctta
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggagcgtcgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaaccctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatctggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacgaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcggggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaatagtggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggtctgcaggccccagaggtgcccagggtcgagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
atgggccaatctggacttaagggggatgcagggatacctggccgctttggccctcctggt
ccttcagggcctttgggggacgttggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgcttcgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccgggacct
ggctttaaaggagataaagggaacaaaggcgctatgggcctcctgggtacgcctgggtat
agaggagacacagggttagagggcagaccgggtaatgatggcacaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccctggacagaaagggctgcctggagcaccagggcct
aaggggaatgatgatcacatcgtggtgacactgatccctggagaacaggggctgccaggt
gacctggggggcagaggagagcgtggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccagtaggcctgcctggattc
caggcagccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttactttgccgggccaatagag
gacggcttcctattcacccgtcacagccagaggcagaatgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgtctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagtacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggctctcatctctggtgactcactggagagc
tatgtcagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacggggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggggcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacttgcaac
tactacactgactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcggctctaa
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