Salvelinus sp. IW2-2015 (Arctic char): 111960646
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Entry
111960646 CDS
T05762
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04382
Cornified envelope formation
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111960646
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111960646
09142 Cell motility
04820 Cytoskeleton in muscle cells
111960646
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111960646
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111960646
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111960646
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111960646
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111960646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111960646
NCBI-ProteinID:
XP_023838520
LinkDB
All DBs
Position
LG4p:complement(18497717..18613591)
Genome browser
AA seq
1669 aa
AA seq
DB search
MTDFLTFPALLLSVLLLLLSGIITPAYTDDACSCTGKSRCHCDGVKGSKGEPGYPGYDGL
PGVVGYPGFEGNPGPFGPKGNLGFPGLSGPKGSRGLPGKPGFSGPPGQPGIPGNEGPMGP
SGIPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHIGPQGRDG
GKGQRGLPGLPGLPGLEGPSGTPGLPGLTGVQGEKGQEGPSPVIPGPRGQEGDQGPPGRP
GQKGIKLYAEGPKELKGEPGETGEKGCTGQHGFPGRXGYKGDKGDEGEPGALGKPGKDGN
PGTYGIQGEKGDVGYQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRVKGLQGFPGPLGPP
GYTGNQGVIGFPGMKGEPGLFFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGK
DGPIGDRGPPGFPDLLRGNPGPPGPKGIKGIPGQPGNSGGFGETGEKGDVCRLCMPTNMR
PGPPGPAGEPGRPGETGRDGDPGSKGFRGVKGLGGPPGPQGPYGLPGVPGSPGPKGDKSP
MSPGDRGPVGAPGAPGVPGSDGTDGVPGYPGLKGQPGLKGNPGPPGPKGDRSDAGSQGIR
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETITTTGDPGLKGEK
GHQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGPAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRPGPPGEDGSLGLTGDSGLPGLGRLPGLPGRD
GPQGDRGSKGAEGLPGLPGDPGACTQGIPGPPGAVGLNGIIGFTGTRGQKGAQGDSGLPG
RGAPGLMGPFGRPGFDGPPGPGGAAGLKGFRGRDGVPGTPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGLMGADGVKGRVGVRGPVGDSGAPGDIGVTTYIEVLGDPGDPGPTVPRGL
TGAKGDLGVIGHNGASGKDGIPGSVGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRRGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNSGCHGQNGLQGSPGLA
GDPGSAGPRGAQGRDGIPGPAGEKGDMGAPGIGPKGTDGKMGQSGLKGDAGIPGRFGPPG
PSGPLGDVGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGLEGRPGNDGTPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCPGQKGLPGAPGPKGNDDHIVVTLIPGEQGLPGDLGGRGERGPTGAQGRNGPP
GLPGPKGVLGLDGPVGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFAGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGDSLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgacagactttctcacttttcccgcactgctcctgagcgttctgttgctactgctcagc
ggcatcatcacacctgcatacacagatgatgcgtgcagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttatgatgggttg
cctggagtggttggttatccaggttttgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctccctgggaaacct
gggttctctggaccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcaggaatcccagggtgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgtccatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatattggaccacaagggagagatggt
ggcaagggtcagcgagggttacctggactgccgggtcttcctgggctggagggaccgagc
gggactccaggattacctgggttaacgggtgtacaaggagagaagggtcaggaaggtcca
agccctgtaattccaggcccaagaggtcaagagggtgaccaaggccctcccgggagacct
ggacagaagggcataaagctgtatgcagagggtcccaaggaactgaagggggagccaggt
gaaacaggagagaaggggtgtacaggccagcatggtttccctgggcgtcktggatataaa
ggggacaaaggcgacgaaggagaacctggggctctggggaaacctgggaaagatgggaac
cctgggacctatggaattcagggtgagaaaggtgatgtgggctaccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcagatcaatgggagagtcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatactggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tttttccctggggcccctgggaatcctgggccccctggtttagctggggataaaggggag
aggggggaacccgccccctacataattggcccccctggacccactgggccccctggaaaa
gatggccccataggcgaccgtggtccccctggatttccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggaaatagtggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgcccactaatatgagg
cctggaccaccaggacctgccggagagcctggtaggcctggagagacaggtcgagatggt
gatcctggatccaaaggatttagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctccaggacccaagggggacaaaagtccc
atgtccccaggagacagggggcctgttggcgcacctggggctccaggagttcctgggagc
gatgggactgacggggtccccggatacccaggactgaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggagcgatgccggctctcagggtatacgt
ggacggacaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcaacctgggggtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcgggtgagacgataacaaccacaggagacccaggactgaagggagagaag
ggtcatcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaacttcggcgccaagggggatagaggtctgtctgtccggggccctcctggcaac
actgggcctaaaggtgagaagggccagccgggacctgctggtgccccagggattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtctgcctgggcttggtagattacctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgccgggtctgcctggggat
cctggagcgtgtacgcaaggcattccaggccctccgggggctgtaggtctcaatggaatc
attggcttcacagggaccagaggacagaagggggcgcagggcgattcaggtctgcctggc
agaggggccccaggattgatggggccgtttggacggcccgggtttgatgggcccccggga
cctgggggggctgccggcctgaaaggattcagaggaagagatggtgttcctgggacacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtctgatgggtgctgatggtgtgaagggc
cgtgtaggagtcaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccttggggaccctggggacccaggacctacagttccaaggggctta
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggagcgtcgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaaccctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatctggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacgaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcggggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaatagtggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggtctgcaggccccagaggtgcccagggtcgagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
atgggccaatctggacttaagggggatgcagggatacctggccgctttggccctcctggt
ccttcagggcctttgggggacgttggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgcttcgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccgggacct
ggctttaaaggagataaagggaacaaaggcgctatgggcctcctgggtacgcctgggtat
agaggagacacagggttagagggcagaccgggtaatgatggcacaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccctggacagaaagggctgcctggagcaccagggcct
aaggggaatgatgatcacatcgtggtgacactgatccctggagaacaggggctgccaggt
gacctggggggcagaggagagcgtggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccagtaggcctgcctggattc
caggcagccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttactttgccgggccaatagag
gacggcttcctattcacccgtcacagccagaggcagaatgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgtctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagtacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggctctcatctctggtgactcactggagagc
tatgtcagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacggggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggggcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacttgcaac
tactacactgactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcggctctaa
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integrated database retrieval system
