KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111960646
Entry
111960646         CDS       T05762                                 
Name
(RefSeq) collagen alpha-5(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510  Focal adhesion
salp04512  ECM-receptor interaction
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111960646
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111960646
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111960646
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:salp04147]
    111960646
   00536 Glycosaminoglycan binding proteins [BR:salp00536]
    111960646
Exosome [BR:salp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   111960646
Glycosaminoglycan binding proteins [BR:salp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111960646
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 111960646
NCBI-ProteinID: XP_023838520
LinkDB
Position
LG4p:complement(18498320..18613436)
AA seq 1669 aa
MTDFLTFPALLLSVLLLLLSGIITPAYTDDACSCTGKSRCHCDGVKGSKGEPGYPGYDGL
PGVVGYPGFEGNPGPFGPKGNLGFPGLSGPKGSRGLPGKPGFSGPPGQPGIPGNEGPMGP
SGIPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHIGPQGRDG
GKGQRGLPGLPGLPGLEGPSGTPGLPGLTGVQGEKGQEGPSPVIPGPRGQEGDQGPPGRP
GQKGIKLYAEGPKELKGEPGETGEKGCTGQHGFPGRXGYKGDKGDEGEPGALGKPGKDGN
PGTYGIQGEKGDVGYQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRVKGLQGFPGPLGPP
GYTGNQGVIGFPGMKGEPGLFFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGK
DGPIGDRGPPGFPDLLRGNPGPPGPKGIKGIPGQPGNSGGFGETGEKGDVCRLCMPTNMR
PGPPGPAGEPGRPGETGRDGDPGSKGFRGVKGLGGPPGPQGPYGLPGVPGSPGPKGDKSP
MSPGDRGPVGAPGAPGVPGSDGTDGVPGYPGLKGQPGLKGNPGPPGPKGDRSDAGSQGIR
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETITTTGDPGLKGEK
GHQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGPAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRPGPPGEDGSLGLTGDSGLPGLGRLPGLPGRD
GPQGDRGSKGAEGLPGLPGDPGACTQGIPGPPGAVGLNGIIGFTGTRGQKGAQGDSGLPG
RGAPGLMGPFGRPGFDGPPGPGGAAGLKGFRGRDGVPGTPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGLMGADGVKGRVGVRGPVGDSGAPGDIGVTTYIEVLGDPGDPGPTVPRGL
TGAKGDLGVIGHNGASGKDGIPGSVGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRRGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNSGCHGQNGLQGSPGLA
GDPGSAGPRGAQGRDGIPGPAGEKGDMGAPGIGPKGTDGKMGQSGLKGDAGIPGRFGPPG
PSGPLGDVGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGLEGRPGNDGTPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCPGQKGLPGAPGPKGNDDHIVVTLIPGEQGLPGDLGGRGERGPTGAQGRNGPP
GLPGPKGVLGLDGPVGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFAGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGDSLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRL
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgacagactttctcacttttcccgcactgctcctgagcgttctgttgctactgctcagc
ggcatcatcacacctgcatacacagatgatgcgtgcagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttatgatgggttg
cctggagtggttggttatccaggttttgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctccctgggaaacct
gggttctctggaccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcaggaatcccagggtgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgtccatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatattggaccacaagggagagatggt
ggcaagggtcagcgagggttacctggactgccgggtcttcctgggctggagggaccgagc
gggactccaggattacctgggttaacgggtgtacaaggagagaagggtcaggaaggtcca
agccctgtaattccaggcccaagaggtcaagagggtgaccaaggccctcccgggagacct
ggacagaagggcataaagctgtatgcagagggtcccaaggaactgaagggggagccaggt
gaaacaggagagaaggggtgtacaggccagcatggtttccctgggcgtcktggatataaa
ggggacaaaggcgacgaaggagaacctggggctctggggaaacctgggaaagatgggaac
cctgggacctatggaattcagggtgagaaaggtgatgtgggctaccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcagatcaatgggagagtcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatactggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tttttccctggggcccctgggaatcctgggccccctggtttagctggggataaaggggag
aggggggaacccgccccctacataattggcccccctggacccactgggccccctggaaaa
gatggccccataggcgaccgtggtccccctggatttccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggaaatagtggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgcccactaatatgagg
cctggaccaccaggacctgccggagagcctggtaggcctggagagacaggtcgagatggt
gatcctggatccaaaggatttagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctccaggacccaagggggacaaaagtccc
atgtccccaggagacagggggcctgttggcgcacctggggctccaggagttcctgggagc
gatgggactgacggggtccccggatacccaggactgaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggagcgatgccggctctcagggtatacgt
ggacggacaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcaacctgggggtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcgggtgagacgataacaaccacaggagacccaggactgaagggagagaag
ggtcatcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaacttcggcgccaagggggatagaggtctgtctgtccggggccctcctggcaac
actgggcctaaaggtgagaagggccagccgggacctgctggtgccccagggattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtctgcctgggcttggtagattacctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgccgggtctgcctggggat
cctggagcgtgtacgcaaggcattccaggccctccgggggctgtaggtctcaatggaatc
attggcttcacagggaccagaggacagaagggggcgcagggcgattcaggtctgcctggc
agaggggccccaggattgatggggccgtttggacggcccgggtttgatgggcccccggga
cctgggggggctgccggcctgaaaggattcagaggaagagatggtgttcctgggacacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtctgatgggtgctgatggtgtgaagggc
cgtgtaggagtcaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccttggggaccctggggacccaggacctacagttccaaggggctta
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggagcgtcgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaaccctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatctggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacgaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcggggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaatagtggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggtctgcaggccccagaggtgcccagggtcgagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
atgggccaatctggacttaagggggatgcagggatacctggccgctttggccctcctggt
ccttcagggcctttgggggacgttggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgcttcgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccgggacct
ggctttaaaggagataaagggaacaaaggcgctatgggcctcctgggtacgcctgggtat
agaggagacacagggttagagggcagaccgggtaatgatggcacaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccctggacagaaagggctgcctggagcaccagggcct
aaggggaatgatgatcacatcgtggtgacactgatccctggagaacaggggctgccaggt
gacctggggggcagaggagagcgtggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccagtaggcctgcctggattc
caggcagccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttactttgccgggccaatagag
gacggcttcctattcacccgtcacagccagaggcagaatgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgtctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagtacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggctctcatctctggtgactcactggagagc
tatgtcagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacggggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggggcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacttgcaac
tactacactgactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcggctctaa

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