Salvelinus sp. IW2-2015 (Arctic char): 111960744
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Entry
111960744 CDS
T05762
Symbol
chrd
Name
(RefSeq) chordin
KO
K04657
chordin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
111960744 (chrd)
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GFIT
Motif
Pfam:
CHRD
VWC
VWC2L_2nd
Amnionless
DUF3040
Motif
Other DBs
NCBI-GeneID:
111960744
NCBI-ProteinID:
XP_023838712
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Position
LG4p:24932924..24977035
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AA seq
953 aa
AA seq
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MLPLAGMQTRRALSSLLCVMSCAWLHSGLASRLKSPVLPIHSEREPLPSKGMSGCSFGGR
FYSLEDTWHPDLGEPFGVMHCVQCYCETQRGRKSKVLGKVSCKNVKQDCPEPSCDDPVLL
PGQCCKTCPKGEVDRKQAEAVFDGFEYFQEKEKEDDLHKSYNDRSYLSSEDISSGESRTD
FVAVLTGVTGSWLPSSSGVARARFSLTRTSLTFSITYQRIGRPSRVVFLDSDGNTAFEYK
TPKGDSDMICGVWKNLPQSHVRQIQAEQLRVTMTTATGRREQIEGKIIKHRALFAETFSS
TLTSEKEHSGMGGXAMLTLSDTENNLHFILILQGLIQHRQRDSPLVPIRVRLQYSQHVLR
EIHANVTAYDPDFAEVLTDLNSRELFWLSRGQLVIAVETEGPDPRHISGFITGRKSCDTI
QSVMSSGDALTAGKTGGVGSAFFHLHDNGTLDYQVQIAGLSSEVVGLTIELKPRRRSKRS
VLYDLAPEFDRPSGRATGSWSRLEARHIHMLLQNELFINVATAHSQEGELRGQIRGLLYS
GLEAPRHEIPVPLAGQFVAPPVLTSAGGHAWVSVDERCHLHYEIVVAGLSKADDLTVNAH
LHGLAEIGELDEHSTNHKRLLTGFYGSQAQGVLKDISVELLRHLDRGTAFIQVSTKVNTR
GEIRGRVHVPNNCEFGTRGEVEVAEFDDLFVRDPEELKKDPHTCFFESQHHAHGSFWTPN
YNNCFTCSCQKRTVICDPVICPVLTCSRTIQPEDKCCPVCLERKEPKNMKTPERLDEHPE
GCYFEGDQKMHAPGSTWHPFVPPFGYIKCALCTCKGATGEVHCEKVTCPALTCSRPARRS
PSDCCKECPEEDNPPLEHADMMQADGTSHCKFGKNFYQNSDNWHPRVPLMGEMKCITCWC
DHGVTKCQRKQCPVLTCSNITRREGMCCSECQDSKEEEEELMKVPEKKNSWRH
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgctacccctcgccgggatgcagactcgccgcgcgctgagttccttattgtgcgtgatg
agctgcgcgtggctgcactctggactggcctcacggctgaagtctcccgttctgcccatc
cattcggagagggaacctttaccatccaagggcatgtcaggatgttcattcggaggaaga
ttctattctctggaggacacttggcaccctgacctcggtgagccgtttggagtcatgcac
tgtgtccaatgttactgcgagacacaaaggggtcgtaagagtaaggtgttggggaaggta
agctgtaagaacgtcaagcaggactgtcctgagcctagctgtgatgacccagtgctgcta
cctggacaatgctgcaagacctgccccaaaggcgaggtggacaggaagcaggcggaggcg
gtgtttgatggcttcgagtacttccaggagaaggagaaagaggatgacctgcacaagtcc
tacaatgaccgctcatacctcagctctgaggacatttcctctggggagagccgcactgac
tttgtagcagtgttgacgggagtgacaggctcctggttacccagctccagtggtgtggcc
cgggcacgcttctctctcactagaaccagcctgaccttctccatcacctaccagaggatc
gggcgaccaagcagggttgtcttccttgattcagatggaaacactgcgtttgagtacaag
acccctaagggagactcagacatgatctgcggagtgtggaagaatcttccccaatcccac
gtgcgacagatacaggcagaacaacttcgggttactatgacaacagccaccggtagacgg
gagcagatcgaaggaaagatcatcaaacacagagcactgttcgcagagacgttcagctcc
actctgacctcagaaaaagagcattctgggatgggaggcatrgccatgctgactctgagt
gacacagagaacaaccttcacttcatcctcatactgcagggactgatacaacacagacag
agagactcccccctggtgcccatccgggtacgactgcagtacagccaacatgtcctgaga
gagatccatgccaacgtcaccgcctatgacccagactttgctgaggtactgacagacctg
aacagtcgggagctcttctggttatcaaggggccagctggtgatcgccgtggaaactgag
ggcccggatcccagacacatctccggcttcatcaccggcaggaagtcatgtgacaccatc
cagagtgtcatgtccagtggtgatgcattgacagcagggaagacaggcggtgtgggatca
gcattctttcatctccatgataacggcaccctggactaccaggtccagatagcggggtta
tccagtgaagtggtgggtctgaccatcgagctaaagcctcggcggcgcagtaagcggtcc
gtgctgtatgacctagctccagagttcgacaggcccagcgggcgggcgacgggaagctgg
agtcgtctggaggcgcgtcacatccacatgctgctgcagaacgaactgttcatcaacgtg
gctaccgcacacagccaggagggggagctacgcggacagatcagaggcctgctctacagc
ggcctggaggcacccagacatgagatccctgtccctctggcaggccagtttgtggcccct
ccagtcctgaccagtgctgggggccatgcctgggtgtctgtggacgagcgctgtcacctc
cattatgagatcgtggtggcaggcctcagcaaagctgatgacctcacagtcaacgcccac
ctccacggattggctgaaatcggagaactagacgaacacagcaccaatcacaagagactg
ctgacagggttctacggttctcaggcccagggtgtgttgaaggacatcagtgtagagttg
ttgcgtcacctggacagagggacagccttcatccaggtcagcaccaaggtcaacaccaga
ggagagatacgcggacgggtccatgtgcctaacaactgtgagtttgggacaaggggtgag
gtggaggtggcggagtttgatgacctgtttgtgcgtgatcctgaggaactaaagaaagac
ccccacacctgtttctttgagagtcaacaccacgcccacggctcattctggacccccaac
tacaacaactgtttcacctgcagctgtcagaagcgcacagtgatctgtgacccggtcatc
tgtccagtcctcacctgttctcgcaccatccagcctgaggacaagtgctgccccgtgtgt
ctcgagaggaaagagcccaagaacatgaagactccagagaggctagacgagcatccagaa
ggttgttactttgagggggaccagaagatgcatgctcctgggtctacatggcatccattc
gtccctccatttggctacatcaagtgtgccctctgcacctgcaagggagcgacaggcgag
gtgcactgtgagaaggtgacgtgtccagccctgacctgcagtcgtccggcacgccgtagc
ccctcagactgctgtaaggaatgtccggaggaagacaacccccccctggagcacgctgac
atgatgcaggcagatgggacaagtcactgcaagtttgggaagaacttctaccagaacagt
gacaactggcacccccgtgtgcccctgatgggagagatgaagtgcatcacctgctggtgt
gaccatggtgtgactaagtgtcagaggaaacagtgtccagtcctgacctgtagtaacatc
acccgccgggagggcatgtgctgttctgagtgccaagattccaaagaggaagaggaggag
ctgatgaaagttccggaaaagaagaacagctggagacactga
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