Salvelinus sp. IW2-2015 (Arctic char): 111960836
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Entry
111960836 CDS
T05762
Name
(RefSeq) retinoic acid receptor RXR-alpha-A
KO
K08524
retinoid X receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03320
PPAR signaling pathway
salp04148
Efferocytosis
salp04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111960836
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
111960836
03320 PPAR signaling pathway
111960836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111960836
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111960836
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
111960836
Nuclear receptors [BR:
salp03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
111960836
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Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
111960836
NCBI-ProteinID:
XP_023838785
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Position
LG4q.1:29:complement(16170057..16347454)
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AA seq
595 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTGNAQRHLHIPSPS
APSWQTQHLGRHLYEINSSGQVTSSPLGSPTSHRGMHPSLLSPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVISSPMGPHSMSSPGMGYGPSVSPQLNSPMNSVSSSEDIKPPLGLNGVM
KVPAQPSQGCMPLSLTKHICAICGDRSSGRCPKVTYTHIPKHTHKPLTRHLWRQPHHHAK
RKYKDICVCEVCVKCLFMATLVLLKMKLSEDGLSVPRYTMECTACEGCKGFFKRTVRKDL
TYTCRDNKDCLIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKERSENEVESTSSVN
EDMPVEKVLEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcttgtcattggggttcctgaagccccagtgctcgctggctccg
cctccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacaggtaacgctcaacgccatctccacatcccatcgccatct
gccccgtcatggcagactcagcacctgggaagacacctgtatgaaataaattcatcaggc
caggtgacctcgtctcccctgggctctcccacgtcccaccggggcatgcacccatccctg
ctcagcccgtcctccatggggccctcgggctccctgcactctcccatcagcaccctgagt
tctcccatgaacggcctgggctcgccattctctgtcatcagctcccccatgggcccacac
tccatgtcctcgcccggcatgggctacggccccagtgtcagcccccagctgaactccccg
atgaactcggtcagcagctcggaggacatcaagcccccgctgggtctcaacggggtgatg
aaggtgcccgcccagccctcacaagggtgcatgcccctctccctcaccaaacacatctgt
gccatctgcggggaccgctcgtcaggtcggtgccctaaggttacatatacacacataccc
aaacacacacacaaaccgctgacacgtcatctgtggagacagccacaccaccatgcgaag
aggaagtataaggatatatgtgtgtgtgaagtgtgtgttaaatgtctgttcatggccact
cttgtacttttaaaaatgaaactcagtgaagatggcctgtctgtccccaggtacactatg
gagtgtacagcttgtgagggctgtaaaggcttcttcaagaggacagtgaggaaggacctg
acctacacctgccgagacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgc
cagtactgtcgctaccagaagtgtctggcctgtggaatgaagagagaagccgtccaggag
gagcgccagcgggccaaagagcgcagtgagaacgaggtggagtccaccagcagcgtcaac
gaggacatgcccgtggagaaggtcctggaggcagagctcgctgtggaacccaagacagag
acctacatcgagaccaacctgggcatgccatccaactcgcccaacgacccagtgactaac
atctgccaagcagccgacaagcagctcttcacgctggtggagtgggccaagaggatcccc
cacttctctgagttgcccctggatgaccaggtcatcctcctacgagcagggtggaacgag
ctcctcatcgcatccttctcgcaccgttcgatagcggtgaaagatgggatcctcctggca
acaggtctccacgtccatcgtaacagcgcccacagtgctggagtgggagccatctttgac
agagtgctcacagaactggtatccaagatgagagacatgcagatggacaagacagagctg
ggttgccttcgggctatcgtcctcttcaacccagactctaaaggcttgtctaacccaggc
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagctgttgctgcggttaccagccctgcgctcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatt
gacaccttcctcatggagatgctagaggcgccccaccaaatgacataa
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