Salvelinus sp. IW2-2015 (Arctic char): 111961223
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Entry
111961223 CDS
T05762
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111961223
09122 Translation
03013 Nucleocytoplasmic transport
111961223
03015 mRNA surveillance pathway
111961223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111961223
03041 Spliceosome [BR:
salp03041
]
111961223
03009 Ribosome biogenesis [BR:
salp03009
]
111961223
03012 Translation factors [BR:
salp03012
]
111961223
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111961223
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111961223
mRNA cycle factors
Stress granule specific factors
111961223
Spliceosome [BR:
salp03041
]
Complex C
Other components
EJC/TREX
111961223
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
90S particles
Helicases
111961223
Translation factors [BR:
salp03012
]
Eukaryotic type
Initiation factors
eIF-4
111961223
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
111961223
NCBI-ProteinID:
XP_023839086
LinkDB
All DBs
Position
LG1:complement(11314584..11327371)
Genome browser
AA seq
406 aa
AA seq
DB search
MEVATVPRTRRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagccaccgtaccgcgcacgaggcgtctattgaaggaggaagatatgaccaag
atcgagtttgagaccagcgaggaggtcgatgttacgcctaccttcgacacaatgggccta
cgagaggatctcctccgtgggatctacgcatacggtttcgagaagccttccgcaatccaa
caaagagcaattaaacagatcatcaagggtagagatgtcattgcacagtctcagtcagga
acaggaaagactgccacgttttgcgtatcagtgctgcagtgtcttgacattcaggtgcgt
gaaacccaagcactgatcctggctcccaccagagagttggctggacagatacagaaggtg
ctcctggccctcggtgactacatgaacgtccagtgtcattcctgcatcggagggacaaac
gtgggtgaggacatccgtaaactggactatggccagcacgtagtagcagggacccctggg
agagtgtttgatatgatccgcaggaggagtttgaggacgcgtgccatcaagatgctggtg
cttgacgaagcagacgaaatgctcaacaagggtttcaaagagcagatctacgacgtgtac
cggtacctgccccccgccacccaggtgtgtctgatcagcgccacgctgccccacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgag
ttgactctggagggcatcaagcagttcttcgtggcagtagagagggaggagtggaagttt
gacaccctgtgtgacctgtatgacaccctcaccatcacacaggctgtcatcttctgcaac
accaagcggaaggttgactggctgactgagaagatgagggaggccaacttcactgtttcc
tccatgcatggagacatgccccagaaggagagagagtccatcatgaaagagttccggtcc
ggcgccagccgagtgcttatctcaactgatgtgtgggcccgaggtctggatgtgccccag
gtgtccctcattatcaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggccgatcaggtcgttacggccgcaagggtgtggccatcaactttgtgaagaacgacgac
atccgtattctccgtgacattgagcagtactattccacacagatcgatgaaatgccaatg
aacgtggctgacctgatctaa
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integrated database retrieval system
