Salvelinus sp. IW2-2015 (Arctic char): 111961227
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Entry
111961227 CDS
T05762
Name
(RefSeq) serum response factor isoform X1
KO
K04378
serum response factor
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
111961227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111961227
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
111961227
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
111961227
NCBI-ProteinID:
XP_023839099
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Position
LG1:complement(11334298..11361697)
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AA seq
527 aa
AA seq
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MLGGNGAGIGTRVGGARPGNGTGLTALQVNNPGTNMSGAEGGRFDDRIREYSAEVVYSGS
EPESDSGDDDDTMGSAGDRRGVKRERAEMEVAASATSVGQPPGGYGGVTGGATGAKPGKK
TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT
RKLQPMITSETGKALIQTCLNSPDSPPRNDPSTDQRMSATGFEETDLTYQVSEGDGCAEP
IKDMMKPTFTMANLSAGVNTQPASTSSSSTSSSVAMHLQNSIPATCWQVSAGINTHSATS
SANGTVLKTSATSTSVMLPGGFTLMSGATLPPGTHTIPFSQLQALQGPLAQTSITTSTAG
HTQQGQQTTLLRLPATVSLTGGGMGQQLQAIQVHPSSQQSSVSHSDLSHITSSSTVSLPT
TIVTSSVPSSMGGHMMYPGAHTVMYATPTTSLGDGSLTVLNTFPQTAHTQSHDPGAVSQV
FLTGHPGTVQIPMSAVQLHPMVIGQQSSSNLTELQVVNLDAHHSKDD
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgttggggggaaacggggcaggaataggtacaagagtagggggcgcacgacctggaaat
gggactgggttgaccgctctgcaagttaataacccaggaacgaacatgagtggtgcggaa
ggtggaaggtttgacgaccgaatcagagaatactcagccgaggtggtgtacagcggctct
gaaccagagtccgactccggggatgatgatgataccatgggttcagccggtgaccgaaga
ggggtgaaacgggagagagctgagatggaagtcgctgcatcggcgacgtctgtggggcaa
cccccgggaggttatggtggtgtcacgggaggtgcaactggggcaaagccaggcaagaaa
acccgcggacgagtcaagatcaaaatggaatttatagacaacaaacttcggcggtacaca
acttttagcaagaggaagactggcattatgaagaaggcctacgagctctccactctyacg
ggcacccaggtcctcctcctggtggccagcgagacgggccacgtctacacgtttgccacg
cgcaagctccagcccatgattaccagtgagacgggcaaggcgctcatccagacgtgcctc
aactcgcccgactcgccgccccgcaacgacccgtccaccgaccagcgcatgagcgccaca
ggcttcgaggagacggacctcacctaccaggtgtcggagggtgacggctgcgcggagccc
atcaaggacatgatgaagccgacgttcaccatggccaatctgtctgccggtgtcaacacc
caacccgcgtcgacctcctcatcctccacttcctcctccgtggccatgcacttgcagaac
agcatccctgccacctgctggcaggtctcggcaggcatcaatactcacagtgccaccagc
agtgccaacggcacggtgctgaagacctcggccacgtcaacgagcgtcatgctacccgga
gggttcaccctcatgtccggcgcaacgcttccccctggcacgcacaccattcctttcagt
cagctgcaggccctccagggccctttggcccagaccagcatcaccacctctaccgcaggg
cacacacagcagggccagcagaccaccctgctccgcctacctgcaactgtctcgctcaca
ggtggagggatgggccagcagctgcaggccattcaggttcaccccagcagtcagcagagc
tctgtgagccacagtgacctctcccacatcacaagcagctccacagtgagcctccccacc
accatcgtcacgtcctcggtgccctcatcgatgggtggtcacatgatgtaccccggcgcc
cacactgtcatgtacgccacacctacgacctcgttgggcgacggcagtctgaccgtgctc
aacaccttcccacagacagcccatacgcagtcccatgaccccggtgctgtatcgcaggtg
ttcctcacaggacatcctgggacagttcagatccctatgtcagcagtgcagctccacccg
atggtgattggtcagcagtcaagcagcaacctcacagagcttcaagtggtcaacctggac
gcccatcactcaaaggacgattga
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