Salvelinus sp. IW2-2015 (Arctic char): 111961250
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Entry
111961250 CDS
T05762
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111961250
Spliceosome [BR:
salp03041
]
Common components
Common spliceosomal components
General mRNP proteins
111961250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
PRP38_assoc
DUF8400
RBD_DEAH11
RRM_7
RRM_10
RSRP
Motif
Other DBs
NCBI-GeneID:
111961250
NCBI-ProteinID:
XP_023839144
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All DBs
Position
LG1:11592800..11628190
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AA seq
529 aa
AA seq
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MADDFDIEAMLEAPYRKDEIKPSSPNGHEERSKKKKKSRSRSKDRKRSKSRDRKKSHDHK
RSRSRERKRSRSKERRRSRTRSRERSGRYRDHKTTFSGPKFNGGSRGKIGPPPVIKLSRR
RSRSRSPFKKEKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVR
MISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQVMAEKNRAAAMANN
LQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDA
ECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDSDELERTGIDLGTTGRLQLMA
RLAEGTGLQIPPAAQQALQMSGAIAIGAMAAVSAAMNPAMNMNMNMNMNTAMNLPSQPLA
THCFQLSNMFNPQSEDDPGWDVDIQHDVIEECNKHGGVVHIYVDKNSTEGNVYVKCPTIP
AAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVTATQLLIPPARR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgatatagaagcaatgcttgaggctccgtatagaaaggatgagatc
aagcccagtagtcccaatggccatgaggaacgcagcaagaagaaaaagaagagcaggagc
cgaagcaaagaccggaagagaagcaagagccgtgatcgcaagaagagccatgaccacaag
aggagccgcagccgcgagcgaaagcggagccgcagcaaggagaggcgccggagccgcact
cggagcagggagcgcagcggccgctacagggaccacaagactaccttctctgggccgaaa
tttaacggtggttccagagggaagattggccctccacctgtcatcaagctaagccgaagg
cgttccagaagccgaagccctttcaagaaagagaagagtcctgtgaggcagccaattgac
aacctgactccagaggaaagggatgctcgcactgtgttttgcatgcagctggcagccaga
atccgtccacgagacctggaagagtttttctctgcagtgggaaaagtgagagatgtgcgc
atgatctctgacagaaattcgaggaggtcgaaggggatagcttacattgagtttgtggag
gccaactctgtgccgctggctataggattgtctggtcagcgacttctgggggtgccaatc
attgttcaggcctcgcaggtaatggctgaaaaaaacagggctgctgccatggccaacaac
ctgcagaagggcaacgctggcccaatgaggctctacgtcggatccttacactttaacatc
acagaggagatgctgagaggaatttttgagccttttggaaggattgagagtattcagctc
atgatggacagtgagactggaagatctaaaggatatggcttcatcactttctcggacgca
gagtgtgccaagaaggccctggagcagttgaacgggtttgagctggccggccggcccatg
aaggtgggccatgtcacggagcgcacagatgcctccaccgccagttcattcctggacagc
gacgagctggagaggacgggcattgacctaggcaccaccgggcgcctgcagctcatggcc
agactggctgaaggcacgggactgcaaattcctccagctgcacagcaagccctacagatg
agtggggccattgctattggtgccatggctgctgtatcagctgccatgaatcctgctatg
aacatgaacatgaatatgaacatgaatacagctatgaacttgccatcccagccactagct
acacactgtttccagctgtctaacatgttcaaccctcagtctgaagatgacccaggctgg
gatgttgacattcagcatgatgtcattgaggaatgcaacaaacatggaggagttgtgcac
atatacgtcgataagaattccactgaaggcaacgtgtatgtgaaatgtccaaccattcct
gctgccatggctgcagtaaacgcattacatggtcgatattttgcaggtaaaatgatcaca
gcggcatacgtccctctcccgacatatcacaacctttttcctgattctgtgacggctacc
cagctcctgatccctcctgctcgccgatga
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