Salvelinus sp. IW2-2015 (Arctic char): 111961352
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Entry
111961352 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: protein strawberry notch homolog 1-like
KO
K26273
protein strawberry notch
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111961352
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111961352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
OspG_kinase
Motif
Other DBs
NCBI-GeneID:
111961352
NCBI-ProteinID:
XP_023839313
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All DBs
Position
LG4q.1:29:complement(7971292..7999635)
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AA seq
1387 aa
AA seq
DB search
MMDPGQDLLLAALSESGICPNDLFDFDPQDAALPSPTPQSISISALGVGSGMEAMAPPTP
AVSIRHKPQPSTTTFVLNQLNQLPSLGTIVVTKPSTGGTARHTITVTKVVHTAPSALRGS
SSTLTYSTASPSQSSTIQLKDLLRTGSTMKSSSLVELMRLKPPPDIXPPVATATATGTTE
LNNGIKKEVSSKDVARIWVNDDMKGRSFSPTLKLPGMEEEAEEEEDEELGHAETYAEYMP
MKLRIGLRHPDPVVETSSLSSVKPPNVWYRMSIPEETVDRGWLSALQLEAITYAAQQHET
FLPNGDRASYLIGDGAGVGKGRTIAGIIYENYLLGRKRSLWFSVSNDLKYDAERDLKDIG
AKNIQVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRFKQLLHWCGE
DFDGVIVYDECHKAKNVCPIGSSKPTKTGLAVLELQNKLPKARVVYASATGASEPRNMAY
MNRLGIWGEGTPFREFSNFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFTGVTFKIEE
VPLTTHYIKMYNKSVRLWVAAREKFQAAANLMEAEQRMKKSMWGQFWSAHQRFFKYLCIA
SKVRRVVQLAREEVKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTAKGVLQSLIEK
HFPAPDRQKLFSLLGIDLSAKKTPSPSEAAAXQKGKKRKGAEIKKPEKRKRKSGGLSGSS
SDDSESEESDKDDAESDDSFKSVSSGEDDDDFNPFKDDSSEDEEDDPWLSGKRKEAKKGK
EKMNKKKTKKKKSIDPDSIHSALLASGLGSIRPAFTTPIVKTSSTPAIAKVEADDSCMTS
QDAVEDAQQMKRDLLDQLEKLAQDLPPNTLDELIDELGGPDNVAEMTGRKGRVVSNDDGS
ISYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAASSGISLQADRRVKNQRRRVHMT
LELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGALTHGDR
RATETRDLSRFNFDNKYGRNALEIVMKSIVNLDSPLVNPPSDFEGDFYKEIRHGLIGVGL
INVEDRSGILSLDKDYNNIGKFLNRILGMAVQEQNALFQYFSDTLAAVIQNAKKNGRYDM
GILDLGSGDEKVKKIEAKKFLTPGYSTSGHVELYTVSVERGMSWEDATHAWAEQSGPDDG
FYVQIRNNKKTAILVQEVNSKKRLFLVYRPNTGKQLKLEAYADIKKKCKKVLSDDAKQHW
IDQYKSSAEICAHAYWRGNCKKASVGLQCEVGLRCRTYYVLCGSVLSVWTKVEGVLASVS
GTNVKMQIVRLRTEDGQRIVGLIIPANCVSPLTNILSSSDQSQQLAVQQQQKWQQLHPQS
LSHVHNT
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcctggacaggatttgctcttggcagccctgagcgagagcggaatctgccct
aacgacctgttcgactttgaccctcaggatgctgctcttccctctcccaccccacagtcc
atctccatcagtgccctgggtgtgggctcagggatggaggcaatggctccacccacacct
gcagtctcaatcaggcacaagcctcagccctcaaccaccacatttgtcttaaatcaactg
aatcagttgccatcactgggaacaattgttgtgaccaagccctcaactggaggcacggcc
agacacaccatcacagtcactaaggtggtccatacagctccctcagccctgcggggatcc
tcttccacacttacctactccactgcctctccctcccagtcctccacaatccagctaaag
gacctgttgaggaccggcagcaccatgaagagcagtagtctggtggaactcatgaggctc
aagccaccgccagacatcngcccgccggtcgccacggcaacagccacaggcaccacggaa
ctgaacaacgggataaagaaggaggtgtcaagtaaagatgttgctcgratctgggtgaac
gacgacatgaaagggcggagcttctcacctacactaaaactcccaggaatggaggaggag
gctgaggaagaggaggatgaagagttgggtcatgctgagacatacgctgagtacatgccc
atgaaattgcggatcgggctgcgtcacccagacccagtggtggagaccagctccctgtcc
agtgtgaagcctccaaacgtttggtacagaatgtccataccagaggagactgtcgaccgc
ggctggctgtctgccctgcagctggaggccatcacatacgctgcccagcaacatgagaca
ttcctccctaacggcgaccgagcgtcctatctgataggagacggggccggagtaggcaag
ggccggaccatcgctgggatcatctacgagaactacctcctcggcagaaagaggtcactc
tggttcagtgtttctaatgacctgaagtatgatgcggagagggatctgaaagacatagga
gccaagaacattcaggtccattcactaaacaagtttaagtatggtaagatctcgtccaaa
cacaacggcagtgtgaagaagggggtgatcttcgctacgtactcctctctgatcggagag
agccagtctggagggaagtacaagacccgcttcaaacagctgctccactggtgtggagag
gacttcgacggagtcattgtgtatgacgagtgtcacaaagccaaaaatgtctgtcccatc
gggtcatccaaacccaccaagactggactggcggtcctggagctgcagaacaaactgccc
aaggcacgggtggtgtacgctagcgccactggtgcgtctgagccccgtaacatggcgtac
atgaaccggctgggaatctggggagaggggacacctttcagagagttcagcaactttatc
caggctgtggagcgcagaggtgttggtgccatggagatagttgccatggatatgaagctg
agggggatgtacattgccaggcagctgagcttcacaggcgtcacgttcaagattgaggag
gttcccttgacaacacactacatcaagatgtacaacaagtctgtacgcctgtgggtggct
gcgcgggagaagttccaggcggctgctaacctgatggaggcagagcagcggatgaagaag
tccatgtggggtcagttctggtcagcccaccagaggttcttcaagtacctctgcatcgcc
tccaaggtccgcagggtggtgcagcttgccagggaggaggtcaaaaacggaaagtgtgtc
gtgattggtcttcagtcgacaggagaggccagaacactggaggccttggaggaaggagga
ggagagctgaacgactttgtttccaccgcaaaaggtgttctgcagtccttgatagagaag
cacttccctgctccagacagacaaaagctgttcagtctgctgggcatcgacctgtcggcc
aagaagacgccatcgcccagcgaggccgccgcagmgcaaaagggcaagaagaggaaaggt
gctgagataaagaaaccagagaagcggaagagaaagtctggtggtctgtcggggagcagc
tctgacgacagcgaatcggaggagtctgataaggatgatgcggagagtgacgacagcttc
aagtcggtcagctcgggagaagatgatgatgacttcaaccccttcaaggatgattccagc
gaggatgaggaggatgacccctggctgtctggaaagaggaaagaggcgaagaaaggcaag
gagaagatgaataaaaaaaagacaaagaagaagaagagcattgacccagactctatccac
agtgccttgttagcctctggtctgggctccatcaggcctgctttcaccacccccatagtc
aagacctccagcacacctgccatagccaaggtagaggcagatgacagctgtatgaccagt
caggatgctgtggaagatgctcagcagatgaagagagatctgttggaccagctggagaag
ctggctcaggatctaccccccaacactctggatgaactcatagacgagctgggaggaccg
gacaatgtggctgagatgacaggccgtaaaggtcgggtggtcagtaacgacgacggcagc
atctcttacgagtcacgctctgaattggatgttcctgtggagatcctcaacctcacagag
aaacagaggttcatggacggagagaaaaacatagccatcatctcggaggcggctagctcc
ggtatctccctgcaggctgaccggcgggtgaagaaccagaggaggagggtccacatgacc
ctggagctgccctggagtgcagacagagccatacagcagtttgggaggacccacaggtct
aaccaggtgacggctccagagtacgtgttcctcatctctgagctggctggggaacagagg
tttgcctccattgtggccaagagactggagagcctgggtgccctcacgcatggagacaga
agagcaacagagacaagagatctcagcaggttcaacttcgacaacaaatatggcagaaat
gcactggagatcgtgatgaagtctattgtcaacctggactctccgttagtgaatcctcct
tcggacttcgaaggggatttctacaaagagatccgtcatgggttgatcggagtgggtctg
atcaatgtggaggaccgatcagggattctgtctctggacaaagactacaataacataggg
aagttcctgaaccgtatcctagggatggcagtgcaggagcagaacgctctgttccagtac
ttctctgacactctggcagctgtcatacagaacgccaagaagaacggacgctacgacatg
ggcatactggacctgggttctggggatgagaaggtgaagaagattgaagccaagaagttc
ctgaccccaggttactccacctcaggacatgtggagctctacacggtgagtgtggagaga
ggcatgtcctgggaggatgccacccacgcctgggccgagcagagtggaccagatgatggc
ttytatgtacagataaggaacaacaagaagacggccatcttggtgcaggaggtgaacagt
aagaagaggctgttcctggtctatagacctaacacgggaaaacagcttaaactggaagcc
tacgctgacatcaagaagaagtgtaaaaaggttctctcagatgaygccaaacagcactgg
attgaccagtacaagtcttcagctgagatctgcgctcatgcatactggcgtggtaactgt
aagaaggcgtcagtgggtctgcagtgtgaggtgggtctgcgctgcaggacgtactacgtg
ctgtgtggctctgtgctcagcgtgtggaccaaggtggagggggtcctggcytccgtcagc
ggaaccaatgtyaagatgcaaatcgtccgcctcaggacagaggacgggcagaggatcgtg
ggcctgatcattccagcgaactgcgtctctcctctgaccaacatcctgtcgtcatctgac
cagtctcagcaactggctgttcagcagcagcagaagtggcagcagctgcaccctcagagc
ctcagccacgtacacaacacatag
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