Salvelinus sp. IW2-2015 (Arctic char): 111961426
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Entry
111961426 CDS
T05762
Name
(RefSeq) nipped-B-like protein A isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
111961426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111961426
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
111961426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
HEAT
Cnd1
Cnd3
ARM_ECM29
Motif
Other DBs
NCBI-GeneID:
111961426
NCBI-ProteinID:
XP_023839450
LinkDB
All DBs
Position
LG4q.1:29:10659926..10717029
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AA seq
2717 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVNCLLACRDEN
LVSQLAHSLNQVSTEHIELKDNLGSDDPEGDVPVLLQTVLSRNPNIFREKNIMQQPIMPQ
YKMSQNSMHGSPASTNYQQSTISHSPSSRFASPQMGSGARFTPQQNSPVPSPYAPQSPAS
YMQQYPHPPSYSQHQQIQQELHGSPVVPAAPSYSGSPKRPVQPCLEVQTQPQASPHQNPS
TPTLVASPVVPASMRNIHDNKVSGQISSNSANHNARHGSNEDYMNIVHRLGNEESDPSMR
NASFPLRSPQSVSSPVGSEGTPKGSRPGLILQSPPPYAPPRDSAPDLLLDSPDHKKKQKK
LTKEEKEQLEKAAMYDIVSSPSKDSTKLTLKLSRVKSSELDQSGELLSGVEDQDTDLAYN
SLQFSRTQQDPAHRLAPGQGEQSGYQQVPVLQNTKQAIGVISGAVYDDAEMDALAEIERI
ERETLIERERCSKEVQDKDKPLKKRKQDSYPQEPGAGGTAGATQPGVGGGNAGSKLAPQE
ASAASNGASRPALMVSIDLQQAGRADGQPEVNMGTPTPAVEARRWPEERLGPEDGSDSTG
VLRLKSKTDGERLQTADGRPEVIKQRADTPKKLGPDGRPETPKHKHENRRDSSKHRHDGK
PDNGKARPDSRTPDTPRQRHEGRSDSGHREDRSRDSDXSRIRRPETPSKSSRGEHDSKHG
RDRDRERADKDRERKHRTEAGEPRDRRSPEQRSRPESPRVKQEGRGGVDPSVRQRTDRPC
PNLKPPNKEERRSGEERRSGDGSRNRQDSKQQQQPAESKQEFPAYLLGGVKSGGFKNFVI
PKMKRDKDGHVLAAEMRKPGSGLGPVMEGWSEPRVKLERLGLVEEMKTGAKPVVVLQKLS
IDEVQKIIREREDRNARGSKSSKSRHSHEKSGKGGLDESVLKELPPHLIAEIESTMPLCE
RVKMNKRKRSTVNEKPKYAEVDSDDSDNDSVTESARKRHKKEREKTWAPDERERRGSGEH
RRSSGGSQERRKGSGRRYRERSPEESDEESPPPSMSDLARKMKKKEKQKKRKAYEPKLTP
EELMDSSTFKRFSASVDNILESLEDIDFNAMDDDEIPQELLLGKHQLSELGSESAKIKAM
GITFRLPSDKLVKVLNILEKNIQDGSKLSTLMNHDADAEDEERLWRDLIMERVTKSADAC
LTALNIMTSSRMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPVYRVNPHGGGYLSSRAK
RAKSSTHKQRVIIMLYNKVCDIVSNISELLEIQLLTDTTILQVSSMGITPFFVESVSELQ
LCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDKDGEPMYIQMVT
ALVLQLIQCVVHLPNNRDSHDDEYNKKVDQDVQITNSYETAMRAAQNFLSVFLKKCGSKQ
GEEDYRPLFENFVQDLLSTVNKPEWPASELLLSLLGRLLVHQFSNKQTEMALRVASLDYL
GTVAARLRKDAVTSQMDQRSIDRILKETQGNDETQQLQKALLDYMDENAETDPSLVFARK
FYIAQWFRDTLTETEKAMKSQNQRGDEDSSEGQHHAKDIESTGEIMQRAEARKKYLRNII
KTAPSQFSTLRMNSDTVDYDDSCLIVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTK
AMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYD
MLIERILDTGISVRKRVIKILRDICLEQPTFNKITEMCVKMIRRVNDEEGIKKLVNETFQ
KLWFTPTPNHDKDAMTRKILNITDVVSACKDTGYDWFEQLLQNLLKTEEDASYKPARKAC
VQLVDNLVEHILKYEESLADIENKGVNSNRLVSCITTLFLFSKNRAQLMVKHAMTMQPYL
TTKCNTQSDFMVICNVAKILELVIPLMEHPSETFLTTIEEDLMKLTIKYGMTVVQHCVSC
LGAVVNRVTHNYKFVWACFNRYYGALTKLKTQHSEDCNNPVLAANKPALLRSLFTVGALC
RHFDFDQEXFKGPSKVVIKDKVMELLLYFTKHEDEEVQTKAIIGLGFQFIQYPGLMFMQD
VKSLYNGILSDRKSSVNLKIQVLKNLQTYLQEEDSRMQEADQQWKKLSKQEDLKEMGDIS
SGMSSSIMQLYLKQVLEAFFHTQSNVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPE
PTMRNKADQQLVEIDKKYTGFIHMKAVAGMKMSYQVQQAIWSAKGTVIRGYRQDETTSAL
CAHLFSMVRSNRQHRRAFLISLLSLFDDSSKMEVNMLLYIADNLACFPYQSQEEPLFIMH
HIDITLSVSGSNLLQSFKESLLKEPRRREKKQKERKYHSEEENSEEEERHSSRSNSSDED
DEVVHRPKKPKHRAQAHVESDSDSDLEMEDLDKVMQRLPDNPVPLLDFANASQGILLLLV
LKQHLKNLYGFSDSKIQKYSPTESAKVYEKAVNRKSHVHFSPRQTLDFLTSDLANVELTY
DIKRRIVKQYLDFKLLMEHLDPDEEDEEGEASASANARNKAITSLLGGSSHQDHKNHHQA
PIETDDDESDGDEKTPGSSRRSRKHGDSAEASGHMNETVGSMDVIALCCPKYKDRPQIAR
VIQKTNTGYRVHWMAGSYSGVWAEAKKRDGRKTVPWVDTIKESDIIYKKIPLTSAHKLTN
RVVQTLRSLYSAKDGTS
NT seq
8154 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccattactactcttgctgggatcgctagccttaca
gacttgttaaaccagctgcccctgccatcccctctccctgccaccaccactaagagtctg
ctgtacaatgggaggatcgcggaggaggtcaactgtctgctggcctgccgggatgagaac
ctggtgtcccagctggctcacagcctcaaccaggtttccaccgagcacatagagctgaag
gacaacttgggcagtgatgacccggagggtgacgtgcctgtgctgctgcagacagtgctc
tctaggaaccccaacatcttcagggagaaaaatataatgcagcagccaataatgccgcag
tacaagatgtcccagaattccatgcatgggagtccggcgtcgacaaactaccagcaatcc
actatctcacacagcccttctagtcgctttgcatctccacagatggggtccggcgctagg
ttcacaccccagcagaacagccctgtgcctagcccttatgccccccaaagccctgcaagt
tacatgcagcagtaccctcatccccccagctattctcagcaccaacagatccagcaagag
ctgcatggttcccctgtcgttccggctgcaccctcttattcaggaagccccaagaggcct
gtgcagccctgcctagaggtgcagacccagccccaggcctccccccaccagaacccctcc
accccaaccttagttgccagtcccgtggttcctgctagcatgcggaacatccacgacaac
aaggtctccgggcaaatttcaagcaactcagccaatcacaatgccagacatggctcgaac
gaagactacatgaacatagtccacagactagggaatgaggagagtgatccttccatgaga
aatgcctccttcccgctccgatcgccccagtctgtttcttcccctgtgggcagcgaaggg
accccaaaagggtcacgacctggcctcattctgcaatcccctccaccttatgctcccccc
cgtgactccgctcccgacctcctcctggactctcctgaccacaagaagaagcagaagaag
ctaactaaagaggagaaagagcagttggaaaaagctgccatgtacgacattgtyagctct
ccctctaaagactctaccaagctgacgctcaaactgtcccgggtgaagtcctctgagttg
gaccaatctggagagctcctatccggggtagaggaccaggacactgacctggcctacaac
agcctgcagttctcccggacgcagcaggaccctgcccacaggttagccccgggccagggg
gagcagtcaggctaccagcaggtccctgtgctccagaacaccaaacaggctataggggtg
atcagcggagctgtgtacgacgatgctgagatggatgctcttgctgagatcgagaggata
gaacgagagacgctcatagaaagggagcgctgctccaaagaggttcaggataaagacaag
ccactgaagaagcggaagcaggactcgtatccccaagagcctggcgctggaggtacagcg
ggggcaactcagcctggygtgggagggggcaatgctggcagcaagttggcaccccaggag
gctagtgcagccagtaatggtgccagccggcctgccctaatggtcagcatcgacctgcag
caagcaggcagagctgacgggcagccagaggtgaacatgggcacccccaccccagccgtg
gaggcccggcgctggcccgaggaacgcctgggtccagaggacggctccgactctaccgga
gtcctgcggctaaagtccaagacggatggagagcgactacagactgcagacggccggcca
gaggtcatcaagcagcgygccgacacmcccaagaagctgggccccgacggccgaccggag
acccctaaacacaagcacgaaaacagaagagactcgtccaaacacagacacgacggaaaa
cctgacaatggcaaggcccgacctgacagcaggacgcctgacacgccacgacaacggcac
gagggccgctcagactctggtcacagggaagacaggtcccgagacagcgacmcatcccgt
atccgcaggccagagacccccagcaagtccagcaggggggaacacgactccaaacatgga
cgggacagagacagggagcgggcggataaagacagggagaggaaacacaggacagaggca
ggggaaccacgggaccgccggtctccagagcagcgctccaggccagagagcccgcgggtt
aagcaggagggccgagggggggtggaccccagtgtgcgccagaggactgaccggccatgc
cccaacctcaaaccccctaataaagaggagaggaggagcggggaggagaggaggagtggg
gacggcagcaggaaccgacargactccaagcagcaacagcagcctgctgaaagcaaacag
gagttccctgcctacctgctagggggggtaaagtctggaggctttaagaactttgtgatt
cccaagatgaagcgggataaggatgggcatgtgttggcagctgagatgaggaagcctggg
tctggtctggggcctgtaatggagggctggagcgagccccgggtcaagctggagcgactg
gggcttgtagaggagatgaagacaggagccaaacctgttgtggtgctgcagaaactcagc
atcgacgaggtgcagaaaatcatcagggaaagggaggacaggaacgcacgcggctccaag
tcctccaagagcagacactctcatgagaagtctgggaaaggaggtcttgacgaatcagtg
ttgaaagaactgcctcctcatctcattgctgagatagagtccaccatgccactgtgtgag
agagtgaagatgaacaaacgcaagcgcagcaccgtcaacgagaagcccaagtatgccgaa
gtcgactccgacgactcagacaacgactctgtgacggagtctgcacggaagcgtcacaag
aaggagcgagaaaagacgtgggcgcctgatgagcgggagaggagaggctcaggagagcac
cggaggagtagtgggggctcccaggagcggcgcaagggatccggcaggcgctaccgagaa
cgcagcccagaggaatcggatgaggaatccccaccacccagcatgagtgaccttgccaga
aagatgaagaagaaggagaaacagaagaagaggaaggcatacgagcccaagctgacacca
gaagaactgatggactcctccacgttcaagaggttctcagccagtgtggacaacattctg
gagagcttggaggacattgacttcaatgccatggatgatgatgagatcccacaggagctt
ctgctggggaaacaccagctgagtgagctgggcagcgaatctgctaagatcaaggccatg
ggcatcaccttcaggcttccatctgataagttggtgaaggtcctgaacatcctggagaag
aacattcaggatggttccaagctctccacactgatgaaccatgacgcagacgcagaagac
gaggagcggctgtggcgtgacctcatcatggagcgcgtgaccaagtcagctgacgcctgt
ctgacggccctcaacatcatgacgtcgtcccgcatgcccaaggcggtgtacatcgaggac
gtgattgagagggtgctgcagtacaccaagtttcacctgcagaacaccctctaccctcag
tatgaccctgtctacagagtgaaccctcatggaggtggctatctgagctccagggctaag
agggctaaaagctccacacacaagcagagggtgatcatcatgctctacaacaaggtgtgt
gacatcgtcagcaacatctctgagctcctggagatccagctgttgactgacaccaccatc
ctacaggtctcctcaatgggcatcactccattctttgtggagagtgtcagtgagctacag
ctgtgtgccatcaaactggtgactgcggtgttctctcgctatgagaagcacaggcagctc
atcctggaagagatcttcacctctctggccagactaccgaccagcaaacgcagcctcagg
aacttcaggctgaacagcagtgataaggatggggagcccatgtacatccagatggtcaca
gctctggtgcttcagctcatccagtgtgtggtgcacctccccaacaacagggacagtcac
gacgatgagtacaacaagaaggtggatcaagatgtccagatcactaactcttatgagacg
gccatgagagcagctcagaacttcctgtccgtsttcctaaagaagtgtggcagtaagcag
ggagaggaggactaccggccgctgtttgagaactttgtccaggacctgctgtctacggtg
aacaaaccagagtggccagcttcagagcttctcctcagtctgctgggccgtctactggtg
caccagttcagtaataagcagacggagatggctctgagggtggcatcgcttgactacctg
ggcacggtcgctgcccgcctgcggaaagacgccgtcaccagccagatggaccagcgctcc
attgaccgcatcctcaaagagacccaaggcaatgatgagacccarcagctacagaaagcc
ttgctggattacatggatgagaacgcagagacggatccatctctagtttttgccaggaag
ttctacatagctcagtggttcagggacactttgacagagacagaaaaggccatgaagtct
cagaaccagcgaggggacgaggactcttctgaaggccagcaccacgccaaggacatcgag
agcaccggcgagatcatgcagagagctgaggcccgcaagaagtacctccgcaacatcatc
aagaccgcgccctcgcagttcagcacactgaggatgaactctgacactgtggactatgac
gactcctgcctgattgtcagatatttggcctctatgaggccgtttgcgcagagcttcgat
atttatttaacacagatcctgagagtgctgggggagagtgccatagctgtcagaacgaaa
gccatgaagtgtttgtctgaggtggtggctgtagaccccagtattctagccaggttggac
atgcagcgcggggtccatggtcgtctgatggacaactccaccagtgttcgcgaggctgca
gtggagctgctgggacgctttgtgctgagcagaccccagctcacagagcagtactacgac
atgctgatcgagagaatactggacacgggtatcagtgtgaggaagagggtgatcaagatc
ttgagagacatctgtctggagcaacccaccttcaacaagatcactgagatgtgtgtcaag
atgatccgcagggtcaacgacgaggagggcatcaagaaacttgtgaatgagaccttccag
aaactctggttcacccctacacccaatcacgataaagacgccatgacccgtaagatcctc
aacatcacagatgtggtgtctgcatgcaaagatacaggctatgactggtttgagcagctg
cttcaaaacctgctgaagacggaggaagatgcttcctataaaccagccagaaaggcctgc
gttcagctggtggacaatctagtggaacacatcctcaaatacgaagagtctctcgctgat
atcgagaacaagggggtgaactccaatcgwctggtgtcctgcatcaccaccctcttcctg
ttcagtaagaatcgagcccagctgatggtcaaacatgccatgaccatgcagccttacctc
accaccaagtgcaacacccagagtgacttcatggtgatctgtaacgtggccaagatcctg
gagctggtgatccctctgatggagcacccctctgagaccttcctcaccaccatagaggaa
gacctcatgaaactcaccatcaaatacggcatgacggttgtgcaacactgtgtgagctgt
cttggagctgtcgtgaaccgggtcactcacaactacaagtttgtttgggcttgtttcaac
cgttactatggtgccctgaccaagctgaagacccagcactcagaggattgcaacaatcct
gttctggctgctaacaaaccggccttgctgcgctcgctgttcactgtgggggcgctctgt
cgccactttgactttgaccaggaggasttcaagggccccagcaaggttgtgataaaggac
aaagtgatggaacttctgctgtacttcaccaaacatgaagatgaggaagttcagaccaag
gccatcattggtttaggcttccagttcatccagtacccagggctgatgttcatgcaggat
gtgaagagtctgtacaacggcatcctgtcggacaggaagagctccgtcaacctgaagatc
caggtgctgaagaacctgcagacatacctgcaggaggaggattctcgcatgcaggaggcc
gaccaacagtggaagaagctgtcgaagcaggaggacctgaaggagatgggggacatctcg
tcaggcatgagcagctccatcatgcagctgtacctgaagcaggtgctggaggccttcttc
cacacacagtccaacgtacgacactttgccctcaacgtcatcgccctgacgctcaaccag
ggcctcatccatcctgtgcagtgtgtgccctacctgattgccatgggaacggacccagag
cccaccatgaggaacaaggctgaccagcagctggtggagattgataagaagtacaccggc
ttcatccatatgaaagccgtggcggggatgaagatgtcctaccaggtacagcaagctatc
tggtcagctaagggtacggtgatccgtggctaccggcaggacgagaccacctcggccctc
tgcgcccacctcttctcyatggtccgatccaaccggcagcaccgrcgagccttcctcatc
tcactgctcagcctgtttgatgacagctcgaagatggaggtaaacatgctcctgtacata
gcagacaacctggcctgtttcccctaccagagccaggaggagcccctgttcatcatgcac
cacatagacatcaccctgtctgtgtccggcagcaacctgctgcagtccttcaaggagtcc
cttctcaaagagccgaggcggcgggagaagaagcagaaagagaggaagtaccactcagag
gaggagaactctgaggaggaggagcgtcacagcagccgctccaacagcagtgacgaggac
gatgaggtggtccacaggcccaagaagcccaaacaccgggcccaggcccacgtggagtct
gactctgactctgacctggagatggaggacttggacaaggtgatgcagcgtctgcctgac
aaccccgtccccctgttggactttgccaacgcctcgcagggtatccttctgctgttggtt
ctcaagcagcacctaaagaacctctatggcttctcagacagtaaaatccagaagtactct
ccgacggaatcggccaaggtgtacgagaaggctgtgaacaggaagagtcacgtgcacttc
agcccacgccagacattggactttttaacctctgacctggccaatgttgaactgacctac
gacatcaagaggaggatcgtcaaacagtatcttgattttaagttactgatggagcacttg
gaccctgatgaagaggatgaggaaggtgaggcgtctgccagcgctaaygccagaaacaaa
gccatcacttcactgctgggagggtccagccaccaggaccacaagaaccaccaccaggct
cctatagagacggacgacgacgagagygacggagacgagaaaaccccagggtcatcacga
agatccaggaagcacggcgactctgcggaggcatcaggtcacatgaacgagacggtaggt
tccatggacgtcatcgccctctgctgccccaagtacaaggaccggccacagatcgcacgc
gtcatccagaagaccaacacrggctacagggtgcactggatggctgggtcctactctgga
gtttgggctgaggctaagaaacgggacggacgcaaaactgtgccttgggtggacactatc
aaggagtcagacattatttacaagaaaatacccttgacgagtgcacacaagctgacgaac
agagtggtgcagactttacggtcactgtactcagccaaggacggaacttcctaa
DBGET
integrated database retrieval system
