Salvelinus sp. IW2-2015 (Arctic char): 111961437
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Entry
111961437 CDS
T05762
Name
(RefSeq) PDZ and LIM domain protein 7 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111961437
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
salp04990
]
111961437
Domain-containing proteins not elsewhere classified [BR:
salp04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
111961437
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
111961437
NCBI-ProteinID:
XP_023839471
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Position
LG4q.1:29:complement(11383033..11454943)
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AA seq
621 aa
AA seq
DB search
MSSNYSVSLVGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKARMSVGDVVLSIDGIATN
SMNHLEAQNKIKACTDNLNLTLQKASSVPKADAPKNEPLEIIKPVPITYPAPPSTFTSPS
PQPGAAYNKTARPFGGGSXVGXVTSSLTAPKVASIPSASSAFTPAAPSSQQAQPPFPLGS
HSRSPAPPIAAQPNSAPPTRPSSGRSPFTTPSSSSSSSPARVTAPSSNPGAPQSSCYNTP
INLYSNTNACEVAIGQRRGLLEAQGVVVDQIKEQFNGNRVEPEVNHASPLSEASKKRMIE
DTEDWHPRTGTSQSRSFRILAQITGTENDQAQENSTGKKEVVEDALPSAQVTSVKTMTKV
PGAPRNGTGVPPPTFKTPSAQVKPSWPAGASAGFPKGGAAPSFGRVSNTAPVPKGPDRPA
PQAHPKDQDSLVQRAEHIAAGTRTPMCGHCDKVIRGPFLVAMGMSWHPEEFNCSHCHASL
VESGFVEERGTVYCAHCYEEFFAPTCTSCKQKVLGEVINALKQTWHVYCFLCASCQQPIR
NNTFHLEDGLPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTSL
EGQAFFSKKDKALCKKHAHTV
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtctccctggttggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcactatctcacggctgaccgatgggggcaaggca
gccaaagccagaatgagtgtgggagatgtagttctgtcgatcgacggcatcgccaccaac
agcatgaaccacctggaggcccagaacaagatcaaagcctgcacagacaacctcaacctc
accctgcagaaagcttccagtgtccccaaggctgatgcaccaaagaacgaaccgctggag
atcattaagcctgtgccaatcacctacccagccccgccatccacattcaccagcccctcc
ccccaacccggtgctgcctacaataagacggcccgcccctttggcgggggcagcartgtg
ggtgyrgtcacttcctccctracygccccaaargtggcctcmatcccytctgcatcgtct
gctttcacccccgctgccccctcctcccagcaggcacagcctcccttcccactaggcagc
cactcccgttctccagccccacccatcgcagcccaacccaactcagccccacccaccaga
cccagctctggccgttcccccttcaccaccccctcctcgtcctcctcctcctccccggcc
agagtgacagccccctcctccaatcctggtgctccgcagtcctcttgctataacacgccm
atmaacctgtactccaataccaacgcctgtgaggtggccataggacagaggcggggcctg
ttggaagcccaaggtgtggtagtcgaccagatcaaagaacagttcaacgggaacagagtt
gaacctgaggtgaaccatgcctcaccactcagtgaggccagtaagaagcgcatgatcgag
gacacagaggactggcatcctcgcaccggcacctcccagtccaggtccttcagaatcctg
gctcagatcactggcacagagaacgaccaagcccaggagaacagcactggaaagaaagag
gttgttgaggatgccctgcccagtgctcaagtcacatcagtgaagaccatgaccaaagtc
ccaggagcccccaggaacggtaccggtgtccccccacccaccttcaagaccccctctgcc
caggtcaaaccctcctggccggctggagcttcagcaggtttccctaagggtggagcggcg
ccctcttttggccgggtcagcaacactgcaccggtacccaaaggtcctgaccgccctgct
ccccaggcgcaccccaaggaccaggactccctggtgcagcgggccgaacacatcgcagca
ggaacacgcacacccatgtgtggccactgtgacaaggtcatcagaggtccgttcctggtg
gccatgggcatgtcstggcaccctgaggagtttaactgttcccactgccacgcgtctctg
gtggagtctggctttgtggaggagaggggaacagtgtactgtgctcactgctatgaagag
ttctttgcccctacctgcaccagctgcaagcagaaggtcctgggggaagtcatcaatgcc
ctgaagcagacmtggcatgtgtactgcttcctgtgtgcgtcctgccagcagccaatcaga
aacaacaccttccacctggaggacgggctgccatactgtgaaagagactactatcaactc
tttggtaccagttgccatggttgtgacttccccatcgaggcaggagacaagtttctggag
gcgttgggattcacctggcatgatacctgcttcgtatgtgcagtctgcagcaccagtttg
gagggccaagccttcttctctaaaaaggacaaggctctgtgcaagaaacacgcccacaca
gtctag
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