Salvelinus sp. IW2-2015 (Arctic char): 111961707
Help
Entry
111961707 CDS
T05762
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04010
MAPK signaling pathway
salp04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
111961707
04020 Calcium signaling pathway
111961707
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111961707
Ion channels [BR:
salp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
111961707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
111961707
NCBI-ProteinID:
XP_023839937
LinkDB
All DBs
Position
LG4q.1:29:complement(24354342..24589842)
Genome browser
AA seq
1896 aa
AA seq
DB search
MCPNSTECTEYWIGPNYGITNFDNILFAVLTVFQCITMEGWVDILYNANDASGNTWNWLY
FIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKRQDFLKLRRQQQIERELTGYLEWICKA
EEVLLEEEDENAEEKSPLDVLKRGKVKKSKNDLIGAEEGEDHFTDMSSVAPPGSPFGRAS
VKSSKLESSSYFRRKERRMRFFIRRMVKAQSFYWIVLCLVGLNTLCVAIVHYDQPEWLTT
ALYLAEFVFLGLFMSEMSLKMYGLGARNYFHSSFNCFDFGVIIGSILEVVWSMIKPGASY
GISVLRALRLLRLFKFTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFG
GQFNFEEETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSVYFIVL
TLFGNYTLLNVFLAIAVDNLANAQELTKDEEKQEEEANKKLALQKAMEVKEVSPMSAANI
SIAAFVKQNRDALSRSSSVSSVHSPKEQQRANKIMSVWEQRTNQLRRNNLRASSEALFNE
LEPEERLRVSSALHLRSDMKTHNDRPLVVEPGNGDKPRPPEEDRDGADSQQEGGDAHGPQ
PRKHYRHRERNGENGESRHHTHHSRSRDHYHPDGPRSKEVKGERSHSREGGQGHRHHHQA
GSPEEGVNGGGEGREDRHHHSDRQGDGALATRDRLESRGRGHREENGERRKHRSRIVRAQ
STLDGDECRENGERNGDRDQGHRDRQTDSQGESLATSPVQPPAGLQAGEKQEDADNQKNS
HRASQAGLNSNTVHIPVTITAPSRETTIIPMDNIDCESLPLNEEKKDLEQELKNGPKHIL
PYSSMFVFGQTNPVRRLCHYVVNLRYFEMCILSVITMSSIALAAEDPVQANAPRNNVLKY
LDYVFTGVFTFEMVIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSGTKGKDIN
TIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFK
GKFFYCTDESKGLEKDCRGKFLDYDGDEVAAQDREWRKYEFHYDNVLWAFLTLFTVSTGE
GWPMVLKHSVDATYEDEGPSPGFRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDK
AMSECSLEKNERACIDFVINAKPLTRYMPADKQSFQYKMWQFVVSPPFEYSIMTMIALNT
VVLMMKFHGAPELYEAMLKYLNIVFTALFTLECILKIIAFGPLNYLKEAWNVFDFVTVLG
SITDILVTEIKDKLINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIA
MLFFIYAIIGMQVFGNIELNEESAINHHNNFQTFFQALMLLFRSATGEAWHEIMLSCLSN
RPCDKLSGSGGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHH
LDEFIRVWAEYDPAACGRMTYLDMYEMLRHMSPPLGLGKKCPPRIAYKRLVKMNMPIADD
NTVHFTSTLMALIRTALEIKLASGVLAQRLCDADLRKDISRVWPNLPQKTIDLLVTPYKN
DEFNELLCPFAVVNRELTVGKVYAALMIFDYYKQNRAKRLEQQLGLDFTGTIKNKKGPAF
FRHMPMTHMQEEGTTVSRANPLPSSQPEPESQPEPMPSTTSLTNGEAVPSTRSPIKESGE
QLSQEGQRSSSRKRILQRGQSEDVPYSNKPQESVEMRQVENGADIGGYSGLDGHGRAASM
PRLDSQYYRNHPRHLPGTYLAPIADISPIRRSASTLASQCPQEMSLRDYTLERPSQAQAQ
ASSAPGQAQDRPHHHHHHRCHRRRDKDRDKKQKSLDRATSVQPSSERGTHMMHACAHIHT
QTCFTWSCSNIHTLKDISLTVEPMQSKLLNYEFIQK
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcctaatagtacagagtgtacagagtactggatcggccccaactacggcatcacc
aactttgacaacatcctgtttgccgtgctcaccgtcttccagtgcatcaccatggaggga
tgggtggacatcctctacaatgctaacgatgcctcggggaacacctggaactggctctac
ttcatccccctgatcatcatcggatccttcttcatgctcaacttggtcctgggtgtctta
tcaggggagtttgccaaagaaagagagcgtgtggagaagaggcaggactttctaaagctg
cgcagacagcagcagatagagagagagctgacgggatacctggagtggatatgcaaggca
gaggaggtgctgctggaggaggaggatgagaacgcggaggagaagtcccctctggacgtg
ttgaaacgaggcaaggtcaagaagagtaagaatgacctgattggtgctgaggagggagag
gatcacttcactgacatgtcctctgttgcccccccaggctctccgtttggccgggccagc
gtgaagagcagtaagctggagagctcgtcctacttccgccgcaaggagaggagaatgcgt
ttcttcatccgtcgcatggtcaaagcccagagcttctactggatagtactgtgtctggtg
ggcctcaacacactgtgtgtggccatcgtccactacgaccagcctgagtggctcaccact
gccctctacctggcagagtttgtgttcctgggtctgttcatgtctgagatgagcctgaag
atgtacggcctgggagccaggaactacttccattcctctttcaactgcttcgactttggt
gtgataatagggagtatacttgaggtggtgtggtctatgatcaaaccaggggcatcctat
ggcattagtgtgctgagggctcttcgtctgctcaggttattcaaatttaccaagtactgg
aactccctgaggaacctggtagtgtctcttctcaattcaatgaagtccattatcagcttg
ctcttcctcctcttcctcttcatcgttgtctttgccctgctgggcatgcagctcttcgga
ggacagtttaattttgaagaggagacgccgacgaccaacttcgacactttcccggcggcc
attctcaccgtcttccagattttgactggcgaggattggaatgcagtgatgtatcatggt
attgagtcccaggggggcgtacggcggggaatgttctcctcggtctacttcatcgtcctc
acactctttggaaactacactctcctgaacgtatttttggctatcgccgtcgacaacctc
gccaatgcacaggagctcaccaaggatgaggagaagcaggaggaagaagccaataagaag
ctggccctgcagaaggccatggaggtgaaggaggtcagccccatgtcagcagccaacatc
tctatcgctgcttttgtaaagcaaaatcgagatgcactctctcgcagctcgtccgtctcc
agcgtgcattcacctaaagagcagcagagagccaataagataatgtcagtgtgggagcag
cgcaccaaccaactgcgtcgaaacaacctgagagctagctccgaggctctgttcaacgag
ctggaacccgaggagcgtctgcgtgtctcctccgccctccacctgcgctccgacatgaag
acccacaatgaccgccccctagtggtggagccaggtaacggggacaaaccccgacccccc
gaggaggacagagacggagcagactcccagcaagagggaggagacgcccacggcccacag
ccacgcaagcactaccgtcaccgggagaggaacggggagaatggggagagcaggcatcac
acccaccacagccgcagtagggaccactaccacccagacgggccccggtccaaagaggtc
aagggggagaggagccatagtcgagagggggggcagggccacaggcaccatcaccaggct
ggatccccagaggagggggttaacggagggggagagggaagggaagaccgccaccaccac
tccgacagacagggggacggggctctggctaccagggacagactggagagcaggggccgg
ggccacagggaggagaacggagaaaggaggaagcaccgctcacgcatagtcagggcccag
tcaacactggatggagacgagtgcagagagaacggagagagaaatggagacagggaccaa
ggacacagggacaggcagaccgactctcaaggggagagcttggccaccagtcctgtgcag
cctcctgcaggtctgcaggctggagagaagcaggaggatgctgacaaccagaagaacagc
cacagagccagccaggcaggcctgaacagcaacactgtccacatccctgtcaccatcacc
gccccatccagagagaccaccatcatacccatggataacatagactgtgagagcctcccc
ctgaacgaggagaagaaggacttggagcaggagctgaagaacggccccaaacacattctc
ccctacagctccatgtttgtgtttggacagaccaacccggtgcgtcggctgtgccactac
gtggtgaacctgcgttactttgaaatgtgtatactgtcggtcatcaccatgagcagcata
gccctggctgcggaggaccctgtgcaggccaatgcaccacgcaacaacgtgctcaagtat
ctggactacgtcttcacaggagtgttcacctttgagatggtgattaagatgatagacctg
ggactgctcctccatcctggttcttacttccgggacctgtggaacatcctggactttatt
gtggtcagtggagctctggtggcgttcgcctgctcaggaactaaaggcaaggacatcaac
accatcaagtctctcagggtgctgcgagttctaaggcctctgaagaccatcaaacgactg
ccaaaactcaaggctgtgtttgactgtgtggtcaactctctgaagaacgtgctcaacatc
ctcattgtctacatgctcttcatgttcatcttcgctgtgatcgctgtgcagctgttcaag
ggcaagttcttctactgcaccgacgagtctaaaggtctggagaaggactgcaggggtaag
tttctcgactatgacggtgatgaagtggcggcccaggatcgtgagtggaggaagtatgag
ttccattatgacaatgtgctgtgggccttcctcaccctattcaccgtctccaccggggag
ggctggccaatggtcctaaagcattctgtggatgccacctatgaggatgagggccccagc
ccaggctttcgtatggagacttctatcttctatgtggtctactttgtggtctttcccttc
ttctttgtcaacatcttcgtggctttgatcatcatcaccttccaggagcagggagacaag
gccatgtcagagtgtagtctggagaagaacgagagagcttgtatcgactttgtcatcaac
gccaagcctctgacgcgctacatgccagcagacaagcagtcgttccagtataagatgtgg
cagtttgtggtgtcgccgccctttgagtactccatcatgaccatgatcgcactcaacact
gtggtgctgatgatgaagtttcacggtgctccggagctgtatgaggccatgctgaagtac
ctgaacattgtgttcacagctctcttcacactagagtgcatcctcaagatcatcgctttc
gggccactgaattacctgaaggaagcttggaacgtgtttgactttgtgacagtattgggg
agtatcacagacatcttggtcacagagattaaggacaagctgatcaatctgagtttcctg
aggctgttcagggcggccaggctcatcaagctgctgaggcagggctacaccattcgcatc
ctgctatggacctttgtccagtccttcaaggccctaccatacgtctgcctcctcatcgct
atgctcttcttcatctacgccatcatcggcatgcaggtgtttggaaacattgagctgaat
gaggaatcagccatcaatcaccacaacaacttccagaccttcttccaggctctgatgctt
ctgttcaggagtgcaacaggtgaggcgtggcatgagatcatgctgtcgtgtctgagtaac
cgtccatgtgataagctgtcagggtccggagggaaggagtgcggcagtgactttgcttat
ttctactttgtctccttcatcttcctctgctcctttctgatgctcaatctgtttgtggcg
gtcatcatggacaactttgagtacctgaccagagacgcctctatcctggggcctcaccac
ctggacgaattcatccgtgtttgggccgagtacgaccctgctgcctgtggccgtatgacc
tacctcgatatgtacgagatgctccgtcacatgtcccctccgctaggtttgggaaagaaa
tgcccgcccagaatcgcctacaagcgattggttaagatgaacatgcccattgccgatgac
aacacggtgcacttcacgtccactctgatggcgctcatccgcactgctctggagatcaaa
ctggcatctggagtcctggctcagcgtctgtgtgacgctgacctgaggaaagatatctcc
agagtctggcccaacctgcctcagaagactatcgacctgctggtcacaccatataaaaat
gatgagttcaatgagcttctttgcccctttgcggttgtaaaccgagagctgacagtgggg
aaggtctacgctgccctcatgatctttgactactacaagcagaaccgggccaagagactg
gaacagcaactgggactggacttcacagggacaattaagaataaaaagggcccagccttc
ttccgccacatgcccatgacccatatgcaggaggaggggacaacagtctccagagccaat
cccctgccatcctcccaacctgaaccagagtctcagccagagcccatgccatccaccacc
tctctaaccaatggggaagcagtgccaagcactagaagtcctataaaagagtcaggagag
caactgtctcaggagggccagcggtccagcagtagaaaaaggattctacagaggggccag
tcagaggacgtgccctactccaacaaacctcaggaatcagtggagatgaggcaggtggag
aacggtgctgatatagggggctactctggtctggatggccatggcagagcagcctccatg
ccaagactggactcccagtactatcggaaccaccctcgtcacctacctgggacctacctg
gcacctattgctgacatcagtcctatcaggcggtcggcgtccacgttggcttcccagtgc
ccccaggagatgagtctgagagactacaccctggagcggcccagccaggcccaagcccag
gcctcctcagccccaggtcaagcccaggacaggccccatcaccatcaccaccaccgctgt
cacagacgcagggacaaggacagggacaagaagcagaagtcacttgacagggcaaccagc
gttcagccttctagtgagaggggtacccacatgatgcatgcatgtgcacacatacacaca
cagacttgtttcacatggtcatgcagcaacatacacactctcaaagatatctcactcact
gtggaacccatgcagtccaagttgttgaactatgaattcatacagaaatag
DBGET
integrated database retrieval system
