Salvelinus sp. IW2-2015 (Arctic char): 111961876
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Entry
111961876 CDS
T05762
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111961876 (setx)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111961876 (setx)
5.6.2.5 RNA 5'-3' helicase
111961876 (setx)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111961876 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
ResIII
AAA_22
AAA_16
nSTAND3
TIP49
UvrD_C_2
AAA_7
DUF4164
Motif
Other DBs
NCBI-GeneID:
111961876
NCBI-ProteinID:
XP_023840255
LinkDB
All DBs
Position
LG4q.1:29:33734390..33784229
Genome browser
AA seq
2451 aa
AA seq
DB search
MMSMCRWCTSLGDDVAKLLQRYCAGSWLAEDEKAVNEEKALNDDLDKCLECVVAYHRAKE
ELPGLHRRLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSNISPAVYEDRLGV
PLSEVLKYPYLLASPELSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNETVRRWAIG
AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN
AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF
MVILDCLGSRFWGQIEPSQAFQAITQSPSYSAELESIRQQTMISRVKTETTCDDDMVTCS
QMVYDSNNKVSKGSRRSRGVASNVVYEDMSSLVTLLHSEVGQALRVHDSTFLWFIPFVKS
VMDLDEHSVLYITEVVHYLCGEISTDLPTPQVCICDKVTEFFTLILVHIIELHLGSGRMN
MLYYCAPKWVGVLVKCSTLPGDAFVHTSEGPVSHSVSSTSSLRVSVPRKASTSRAVPQAC
MHIIRSLLKEGTRLNPNSKCHHFLNRLNKHLREGQQREWKLIRSEIQELQICLKDYVKMM
MNRPTISTSPPEPLNIEAGPVAPTTPPLQSSNDPSGPSSLAEFNPPIKREGLWDDVEGST
SGGGGSNGVQSGWDIDLALLKKEPLTPEEEFVEPTNDSRPTQDNVTSLRADPEKIQVIKS
RLGQLMTKKSKSERARPSVGLSEFGKEKPENLLTSRREEASNLHGISRPPPCLQESVDNV
PLSVLKSNLKGKEGSKSSRDRSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVVRARST
ESFSKTSQIKNEPDASDQNPSPWRDYDGDMSESQVFEFETQEDMASAWSNRDSESNIPPE
KLKENSPVSPTSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPPQGLKRAIVVKK
RNLLVDAKPLASKCLSKKPTVVEKLIKEPVKDATHAVTPPLRNCSSTVRSNRLDTETHFS
LTTSAISRKTSLTPAIVPPKKVRKATEPVSTAEKLGLKKKVRKAFDLSQGSRDIVGDLRH
HGATVNVPQAKKPTRQTKRSKVTFPQKRVVKGSNNKLFQFFRQSKQALGAGISAKAEPMK
RNPKKIDEIQTPSFVTEEDDEDEDLQCSQLDPTRHEEQLTVNCSSQRANENKPASSNTVS
SVVSNMDRQISPYFQRNDDVTPGPSGQVPKSNEGEDYDAEWMYLTQMEPTEMEMCSQLEE
EEEELFYTQRDPVDMDIDADSQMPFEEKGGSSDWTWPKQANEGQEAPLATQTFKKPHTPP
PSRSSLTQDDDRLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAPLSAS
SAPAGRGRPTRPVVPARPVVPARSPCVRQPPPYPEVGQSLPLNRLLYKPIAPQLPPKPNP
PKQPPPRPEQNIPRPPGQPLRPIQHSNIGSTPQPSTSSHYGPSRSQMPNPEVGFRFDTNY
LIQHILKWTFDMFSNYKQFGIPSEVCELPLMEVGFSFSSYDEYYKTFYPLLLTNTFEELA
GEWLKNKESGKVITQNLKVVAHEYSHSVWNVSFTASITASDDSRQMYPREEDLVILWLPQ
NTGAYPWHEQGFLDPQEQFGYVQRSNVCNGGVGQCPTLNLMIKTLGNVTLANKQAVRCDV
VGSLVSTLREFRAICLLNGSSMLKPLLAPHVSYFQPGPEVIPSLNLPDYNLDQVRAVRTG
LSVIRNQQLAPKICLIHGPPGTGKSKTIVGLLQKLFSEGVQSMAPPGSRQSEPRRMRVLL
CAPSNAAIDNLMKKIIPVFKEKCKNIQGNCGDINLVRLGNERTISKNLKPFSLDSQVKNK
TQKAQMSQELDIHRHRAQLDESIDKISKMLPKLQKKEEMYHELAMQKYRLLQERQKLSSQ
LKQSRSKTQETQAQVLQDAHVVCCTLSTSGSTILESAFRRLGHKPFICIIVDEAGQATET
ETLIPMRYQCNALILVGDPHQLPPTVISQKAKELKYGQSLMARLVRNLDDYCKENKKPSP
VVFLSCQYRMHPEICEFPSKHIYHKALKTDSETAERRGNFGWPLQPYRVFDVTDGQEVKE
GASFSNLKEVQLVVFLLRLMAEKQQVKVGVITPYNAQKDRINREMAKVVNKNLTVDVDTV
EGFQGREMDCIIVSCVRASDEQGGIGFLGNRQRLNVTITRAKFSLFILGHLRTLQENQDW
GALIKDAATRDVIISTNEMTFKTDARKIFKQELTRSLSYPLREPGPPPAAPCPTADPPRP
APFQLRRSSEPALFAQGRDSPQQPWSASPPQDADRPRDPRLVVQTPQHRADWNLRAEGIR
VPQAEIRRDPRAEREPRGCNSPEQRHPTGYQNQRWAVRERDREQHRSPVSEPYPGDGVNR
PPREPRQRDYNRYSATASFNHHTHTHPRKRDPDPRWIHPTYSKRGKERTDH
NT seq
7356 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcatgtgccgttggtgcacgtcattgggtgacgatgttgcaaaactgctccag
aggtactgtgctgggtcttggttagcagaggatgagaaggcagtcaacgaggagaaggca
ctcaacgatgacctcgataagtgcctggagtgtgtggtagcataccatcgggcgaaggag
gaattgcctggactgcaccggaggctatgggagttggagacgtccaggctcctggacttg
ttttctcatgcagcgaaagacgcacagccggctaaggacctcagctatgtagaagaggac
ggccgggaaatcggagtgtcaaacatcagccccgcagtgtacgaggaccgtctgggggtt
cccctgtcagaggtcctcaagtacccctacctgctggcatcccctgaattgagtgaaatg
tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat
ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt
gctgcaaggtctttagggaaggtggaccgagacgacttttatgaccttcaggacatcttc
acctgcatgttctacattgtcgagcttagaatcccccagaacttcccagacatggatacg
tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat
gccaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaagctatg
gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc
ttgaaggatgaagaaccatccaacgagatggatcccttctggccagtcttgcaatgtttt
atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc
ttccaggccatcacacaaagccctagctactctgcagagctcgagagcatcagacaacaa
accatgatatcacgggttaaaacagaaactacatgtgatgatgacatggtgacctgcagt
cagatggtatatgacagtaacaacaaagtgagcaagggaagcagacgctcacgtggtgtg
gctagcaatgtggtctatgaggatatgagttctctggtcactctcctgcattcagaagtg
ggacaggcattgcgtgtgcatgacagcacatttctctggttcatcccctttgtgaaatct
gttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactacctatgt
ggggagatcagcacagacctcccgacgccccaggtttgcatatgtgacaaagtcacagag
ttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatgaac
atgctctattactgcgctcctaagtgggtgggcgtgttggtgaaatgttccaccctgcct
ggtgacgctttcgtccatacctcggaaggtccagtttctcactcggtgtcttccacatcc
tccttaagggtcagtgtgccccgaaaggcctctactagcagggctgttccacaggcatgc
atgcatatcatccggtccctgctgaaggaagggaccaggctgaaccccaacagcaagtgc
caccacttcctgaaccgtctgaacaagcacctcagagaagggcaacagagggagtggaag
ctgattaggtcggagattcaggagcttcagatctgtctgaaggactatgtcaagatgatg
atgaacaggccaaccataagtacttctccacctgaaccgctgaacattgaggcagggcct
gtggcaccaaccacaccaccacttcagtcaagcaatgacccctcgggacctagcagctta
gctgaatttaaccctcctataaaacgggaagggttgtgggatgatgtcgaaggcagtaca
tctggtggtgggggttctaatggagttcagagtgggtgggacatagacctagcgttgctg
aaaaaggagcccctaacccctgaagaggagtttgtagagccgactaatgattctagacca
acccaagacaacgtaacttccttgagggcagatccagagaaaatacaggtgatcaaatcc
agactcggccagcttatgaccaagaagtccaagtctgagagagccaggccctctgtaggg
ctcagtgaattcggtaaagagaaacctgaaaatctgttgactagccgtagagaggaggca
tccaacctccacggcattagccggccccccccatgcctccaagaatccgtggacaatgtg
cccctctctgttttaaaaagtaatcttaaagggaaagaaggctccaaatcctcacgagat
cggagtaaaggaaactcgagacaatttgaccgaccacaatctccaccaaagtcaacttct
gatgtaattgttatatctgatgacgaggctacattagatgttgttagagcaagaagtact
gagagtttttctaagacctcccaaataaaaaatgaaccagatgcctctgaccagaatcct
agtccctggcgtgattacgatggagacatgagtgagtctcaggtgtttgaatttgaaaca
caggaagatatggcctctgcctggtccaacagagattcggaaagtaacataccacccgaa
aagctcaaagaaaatagccctgtcagtccaacttcaagagagcctttatcaagctgggaa
tgtgatacacaaccgatctatgacgaggatattgaaagagcctgtcagcaggttgagaag
gagcttgagaagcctaagaccccacctcaagggctcaaacgggccattgttgtcaaaaaa
agaaatcttcttgttgatgcaaaaccattggcctccaagtgcctgagcaagaaacctacg
gtggtagaaaaactaatcaaagagcctgtgaaggatgcgacccatgcagtcacaccgcca
ttgagaaattgcagttcaacggtacgttcaaacagactggacactgagacacacttttcc
ttaaccacatcagccatctcacgcaaaacgtcattaactccagccattgtccctcctaaa
aaagtcagaaaagccacagagcctgtgtccacagctgagaagcttggccttaagaagaag
gtgcgaaaggcctttgatctctcccagggatcacgtgatattgttggtgatctgaggcac
cacggcgctacagtcaatgtcccacaggccaagaagcctacccgacagaccaagaggtcg
aaggtgaccttccctcagaagagagtggtcaaagggagtaacaataagctgttccagttc
ttcaggcagagcaagcaggcattgggagctggaatctctgcaaaggcagagccaatgaag
agaaatccaaaaaagattgatgaaattcaaactcccagttttgttacagaggaggacgat
gaagatgaggacctgcagtgttcccagctagatcctacccgtcatgaggaacagctgacg
gtcaattgcagctctcaaagagccaatgagaacaaaccagcatcctccaatacagtgagt
agtgtggtgtccaacatggacaggcagatctctccatactttcaaaggaatgatgatgtc
acacctggaccttctggtcaagtccccaaaagcaatgaaggtgaagattatgatgcagaa
tggatgtacctcacccaaatggagccaactgaaatggagatgtgctcgcagctggaggag
gaggaagaagagttattctacacacagcgggaccctgtagacatggacattgacgcagac
agccagatgccctttgaggaaaaaggaggatcttcagactggacatggcctaaacaggca
aacgaagggcaagaggctccacttgccacacagacttttaagaaaccgcatactccgcca
ccctcgcgctctagcttgactcaggatgatgatcgcttgttcctgaaaccaggaatgtct
cctatgtctgttaaaaaggccaagccgtccaccaccaagatctacgcaacctcaagctct
aggagtgcctccttggtgcaagagatggagaggactgccaatgctccattgtcggcttct
tctgcccctgctggaagaggtaggcctacccggccagttgtgcctgcccggccagttgtg
ccagcacgaagtccctgtgtacgacaaccacctccttatccagaggttggtcagtctctt
ccactgaatcgactcttatacaaacccattgcaccacaactaccacctaaacccaatcca
ccaaaacaaccaccacccagacctgaacaaaacatcccccgtccacctggccagcccctc
cgccctatccagcacagcaacataggttccaccccccagccctccacctccagtcactat
ggcccttcccgaagtcagatgcccaacccagaggttggcttcagatttgacaccaactac
ctaattcaacacatcctgaaatggacctttgatatgttcagtaactacaagcagtttggt
ataccctctgaggtatgtgagttaccgttgatggaagtaggcttcagcttcagctcttat
gatgaatactacaagaccttttaccccctgcttctcaccaacactttcgaggagcttgca
ggtgaatggctaaagaacaaggaatcaggaaaggtgataactcagaatttaaaagttgtc
gcacacgagtacagccacagtgtttggaatgtcagttttacagcgagcattactgccagt
gatgactcccgtcagatgtaccctagggaggaggacctggtcattctgtggctgccccag
aatacaggtgcttacccatggcatgagcagggcttcttggatccccaagaacaatttggc
tatgtgcagagatccaatgtctgcaacggaggcgtgggccagtgcccaactctgaacctg
atgataaagaccctggggaatgtgacgttggcgaacaagcaggcagtgcgctgtgatgtg
gtgggctccctggtcagcaccttgagggagttcagggcaatctgtctgctcaatggcagc
tctatgctcaagcccctcctggccccacatgtctcctacttccaacctggcccggaggtc
atccccagcctcaacctgcctgattataacctagaccaggtgagggcggtgagaaccggt
ttgtccgtcatcaggaaccagcaactcgccccaaaaatctgcctgatacacggaccccca
ggaacgggaaagagcaaaaccatcgtgggcctgctgcaaaagctgttctctgagggagta
cagagcatggctcctccagggagcaggcaatctgaaccccgccgcatgagggtcctcctg
tgtgccccgtccaacgccgccatcgacaacctgatgaagaagattatcccagttttcaag
gagaagtgcaagaacatccagggtaactgtggggacatcaatctggtgaggcttgggaac
gaaaggaccatctccaagaatttaaaaccttttagcctggacagtcaggtgaaaaacaaa
acacaaaaagcccaaatgtcacaggaactagacatccaccggcacagagcgcagctggac
gagagcatagacaagatctccaagatgttgccaaaactgcaaaagaaagaggaaatgtac
catgagctggcaatgcagaagtacagactgctccaagagagacagaaactcagctcccaa
ctcaaacaatctcgcagtaagacgcaggaaacccaggcccaggtactgcaggatgcccat
gtggtctgctgcaccttgagcaccagcggcagcaccatcctggagtcggcgttccggcgc
ctgggacacaagccctttatctgcatcatcgtggacgaggcagggcaggccaccgagacg
gagactctcatccctatgcgctaccagtgcaacgccctcatcctggtgggagacccccat
cagctgccccccacggttatctcccagaaagcaaaggagttgaagtacggccagtccctg
atggctcggctggtgaggaacctagatgactactgtaaggagaacaagaagcccagccct
gtggtcttccttagctgccagtaccgcatgcaccccgaaatctgcgagttcccctccaag
cacatctaccacaaggcccttaaaactgacagtgaaactgcagagaggagggggaacttt
ggctggcctctccagccctaccgtgtgtttgacgtgaccgacggtcaggaggtcaaggag
ggagcgtcgttcagcaacctgaaagaggtgcagctagtcgtgttcctgctgaggctgatg
gctgagaagcagcaggtcaaggtgggggtcatcacgccctacaatgcccagaaggaccgc
atcaaccgcgagatggccaaggtggtcaacaagaacctcacggtggacgttgacactgtg
gaaggcttccagggccgagagatggactgtatcattgtctcttgcgtcagggcgagcgac
gagcagggcggcatcggattcctggggaatcgccagaggttgaatgtgaccatcacccgg
gccaagtttagcctgttcattctgggccatctacggacactccaggaaaaccaagactgg
ggcgcgctcatcaaggatgcagctacacgagacgtcattatatcaacgaatgagatgacc
ttcaagaccgacgccaggaagatcttcaagcaggagctgaccaggagcttgtcttacccc
ctcagagaaccaggccctccccctgctgccccctgtcccaccgccgatccccccaggcct
gctcccttccagctacgccgctcttctgagccagccctgttcgcccagggcagggactcc
ccccagcagccctggtcggcatcccctccccaggacgctgacaggcccagagacccccgt
ctggtagtccagaccccccagcatagagcagactggaatctgcgagctgaaggaatcagg
gtcccacaagccgagatcagaagagacccacgagctgagagggaaccacgaggatgcaac
agcccagagcagcgtcaccccactgggtaccaaaaccagagatgggctgtcagggagagg
gacagagagcaacaccgttcaccagtctccgagccatacccaggagacggagttaacaga
ccaccgagggaacccagacagagagactataatcgctacagtgctacagcctccttcaac
caccacacacacactcatccccggaaacgagacccagacccccgatggatccatcccacc
tactccaagagggggaaagagaggactgaccactga
DBGET
integrated database retrieval system
