Salvelinus sp. IW2-2015 (Arctic char): 111962021
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Entry
111962021 CDS
T05762
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111962021
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111962021
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
111962021
NCBI-ProteinID:
XP_023840532
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All DBs
Position
LG4q.1:29:44607615..44609810
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AA seq
311 aa
AA seq
DB search
MVNMYNIMEHQLKSSGPSHHLGTGMPPANGGGGHGGGHTGSKPPAIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKLMPKNNTLAAQYQMSAGNHLLGASTAQGQVGNPRIDSYGWGHTGGYTAAM
QSEALGYSQQLHRYDLSALQYQSSVAQAQAYMNGANAYSPMSYSSSTQQVSPVMSMVKQQ
SDGHSMSPSPTGTHNHHQAQRGLQVQGDHLRDMISMYMPGGDASDAQRGYSASAANIQQH
YLGGSAPLTHL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatggagcaccaactcaagtcctctggtccctcgcatcat
cttggaacagggatgccacctgcgaatggaggaggggggcacgggggcggccacacagga
tccaaaccaccggcaatccaacctgacccgatggacaaagtcaagcggcccatgaatgcc
ttcatggtatggtctcgcggcgagcgacggaaaatggctcaggagaatcccaaaatgcac
aattctgagatatccaaaagactgggtgtcgcgtggaaatctctgacagacgcagagaaa
aggcccttcattgacgaggccaagcgcctccgcgcggtgcacatgaaggattatccagac
tataaatacaaaccccgtcgtaaaaccaaactaatgccgaagaacaatactctagccgcg
cagtatcagatgtcggctggtaaccacctgctgggtgcgtccacggctcagggacaagtt
ggaaaccccagaatcgacagttatggctggggccacaccgggggctacaccgcggcgatg
cagagcgaggccctcggctacagccagcaacttcaccgctatgacctgtcagcacttcag
tatcagtccagcgtggcccaggcccaggcctacatgaatggtgccaacgcatacagcccc
atgtcctacagcagcagcacccagcaggtcagcccagtgatgtctatggtgaagcagcag
tctgatggccacagcatgtccccctccccaacggggacccacaaccaccaccaggcccag
cgtggtctccaggtccagggggaccatctcagagacatgatcagcatgtacatgcctggg
ggggatgcctcagatgcccagagggggtactctgcatccgcagctaacatccagcagcat
tacctgggagggtcagctccactcacccacctttga
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