Salvelinus sp. IW2-2015 (Arctic char): 111962093
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Entry
111962093 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
salp00535
]
111962093
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111962093
04091 Lectins [BR:
salp04091
]
111962093
Proteoglycans [BR:
salp00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
111962093
Glycosaminoglycan binding proteins [BR:
salp00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
111962093
Lectins [BR:
salp04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
111962093
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
111962093
NCBI-ProteinID:
XP_023840686
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Position
LG4q.1:29:50703618..50737586
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AA seq
1327 aa
AA seq
DB search
MITLLLLCVSLPFVTSTISFEDPSDLDSTLSVSIPMDVPLRPLMGTKVVVPCYFHDNPIN
HPGMPTVNPLSHRIKWTYITKGKATLILVASEGKVHVETEYLDRVTMANYPLVPTDITIE
ITELRSKDSGTYRCEVMHGIEENYDSVDIQVQGIVFHYRAISTRYTLNFERAKAACIQNS
ATIATPAQLQAAFDDGFHQCDAGWLSDQTVRYPIHEPREGCFGDKDEFPGVRTYGVREVN
ETYDVYCFAQKMSGRVFYSMSVEKFAFYQAMDQCAKLGAKLATTGQLYLAWKAGMDVCNA
GWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPYPDSRYDAICYQEDDGEVKTT
PFPEVATITAGPMVYLGRTTAPEAEAQGEVLTQAPLDTSMERPLPILPSVNDTYAKVTPV
VGEEIISRVTAKPNVASEFPRDNDTAMSPTGVVFHYRAGSSRYALSFVEAQLACQSVGAV
IASSQQLQAAYEAGLHHCDAGWLRDQTVRYPILSPRDKCSGNLEHLPGVRSYGLRPATER
YDVYCYVDRLKGELFYTSDYDSFSYKEAVAHCQKLNTTLATTGQLYAAWRQGFDKCRPGW
LQDRSIRYPIHNPRPHCGGGKAGVHTIYAFPNQTGHPDQHSRYDAYCFRAEPTIIHTETR
LNVTVVVEEEIINMTTRTDQLTPVSPIVPPVSVDVSGSGLAEHSTSGSGSGTPGSGDTSG
GASGEGSGSGFQVTSEGSGHILSGQGSSSGGLQEAVEGSTTVTYTGSGNSGSGVGVGEFS
GGLPSGVLPHSGSGSGVSRDLSGSGDSVIIMVDGEMVDISKQQPAGQEFGQGGVDVSGSS
GVSGSGGFFSGDVTSTSGSGLPDISFEHSGLIDLTEKSSGEQEVSGYQPFASGFPSSFCS
GYPSGFHSGSGFPSSGDGSHSGLEVIFMTEDEMMEVTTQWRPEQGRGYVEVSGDGSSQHE
GSTSASGLSLGESTVAEGLSVVLPPESTMTYPEYITYLGNTGRGDDLDLVEEGQELEDHE
QKGQEQEGLEGPTETINVTAPSAFFSSPTTATAVSMVTPVVVEEPAVVDATPDLCEPNPC
GTGTCSVQDGIALCQCPHGFTGEDCSTSVQGCAEGWWEFMGSCYMHFLERDTWPDAEQRC
QXLNSHLVSITSQQEQEFVNSNAQDYQWIGLNDKDVQNKFRWTDGSPLEFENWRPNQPDN
YFNSGEDCVVMIWHENGQWNDVPCNYHLPFTCKSEPVVCHSPPEVNNARPMGSLRDRYPV
NSIVLYQCDAGFTRRHPPVARCLPDGRWEEPQVECIGPGATPSNRLHKRSIRRRSKAANS
RSWRKLL
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccttgctcctactgtgtgtgtctctgcccttcgtcacctcaacaatatcattt
gaagaccctagcgatctcgacagtaccttgagtgtcagcatccccatggacgtgccactg
cgccctctgatgggcaccaaggtggtggtgccctgctacttccacgacaacccgatcaac
cacccgggcatgcccactgtcaaccccctgtcccaccgcatcaagtggacatacatcacc
aagggcaaggccaccctcatcctggtggcgtcggagggcaaagttcacgtggagacggag
tacctagaccgggtcaccatggccaactacccgctggtgcccaccgacatcaccatagag
atcacggagctgcgctccaaggactcaggcacataccgctgtgaggtcatgcacggcatc
gaggaaaactatgactcagtggacatccaggttcaaggtattgtgttccactaccgagcc
atctctacacgctacactctgaactttgagagggccaaggctgcctgtatccagaacagt
gccaccatcgccaccccagcccagctacaggctgcctttgacgatggcttccaccaatgt
gacgccggttggctatctgaccaaacagtcaggtaccccatccatgagcctcgtgagggt
tgctttggagacaaggatgagttcccgggcgtgcgaacctacggcgtgagagaggtcaat
gagacctatgatgtgtactgcttcgcacagaagatgtcaggcagagtgttctactccatg
tccgtggagaagttcgccttttaccaggcaatggaccagtgtgccaaactaggggccaag
ctggccaccacagggcagttgtacctggcctggaaggctggcatggacgtgtgcaacgcg
ggctggctggcagatagaagcgtccgctaccctatcaacattgccaggccgcagtgcggt
ggaggactacttggagtgaggaccgtgtacctgttccctaaccagacaggctacccctac
ccagactcccgctacgacgctatctgctaccaagaagacgacggcgaagtcaagaccacc
ccgttcccagaggtggccaccatcacagctggccccatggtttacctggggcgtaccacc
gcccctgaggctgaggcacaaggggaggttctgacccaagcccccctggacaccagcatg
gaacggcccttacccatcctccccagtgtgaacgacacgtatgccaaggtcaccccggtt
gtgggggaagagatcatcagcagggtgacagctaaacctaatgtggcctccgagttccct
cgtgacaatgacactgccatgtctcctacaggtgtagtgttccactaccgtgctggctcc
agtcgctatgccctgtccttcgtggaggcccagctggcctgtcaaagtgtgggtgcggtc
atcgccagctctcagcagctccaggcagcctacgaggcagggctccaccactgtgatgca
ggctggctcagggaccagaccgtcaggtaccccatcctgtctcccagagataagtgctca
gggaacctggagcatctcccaggcgtgaggtcctatggcctgagacccgctaccgagcga
tacgatgtctactgctatgtggaccgcctcaagggggagctgttctacaccagcgactat
gacagcttctcctacaaggaggccgtggcccactgtcagaagctcaacaccacgctagcc
accacagggcagctctatgccgcctggagacagggctttgacaagtgccgtccaggctgg
ctgcaggaccgcagcatccgctaccccatccacaaccccaggccccactgtggaggaggc
aaggctggggtacacaccatctacgccttccccaaccaaacgggacaccctgaccagcac
tccagatacgacgcatactgcttcagagctgaacctacgattattcacactgaaaccaga
ctcaacgttactgtagttgtcgaggaggaaattatcaacatgacaaccagaacggaccaa
ttgactcctgtgagccccatcgtaccacctgtatctgtggatgtgtccggttcaggctta
gctgagcattctaccagtggtagtggcagtggaacccctggtagtggagatacatctggt
ggggccagtggcgagggctccgggtctggcttccaagtcacatccgagggcagtgggcac
atcttgtcaggacagggctctagctctggaggtctacaggaggcagtagaggggagcacc
actgtcacttacaccgggtctgggaatagtggctctggggtgggggtgggagagttcagc
ggtgggctaccgtctggtgtccttccccactccggtagtggcagtggggtatctagggac
ctgagcggtagcggggactctgtcatcatcatggtggacggagagatggttgacatctcc
aagcagcagcccgccggacaggagtttggacaaggtggtgtggatgtcagtggctccagt
ggagtgtccggatcgggcggcttcttcagcggggatgtgaccagcacttctggctccgga
cttcctgacatatctttcgagcattcaggtctcattgacctgaccgagaagtcctcggga
gagcaggaggtttctggctaccagcccttcgcctccggttttccaagcagtttctgctcc
ggttatccttccggttttcacagcggctctggattcccatccagtggtgacggatcccac
tcaggccttgaggtcatcttcatgacagaagacgagatgatggaggtgacaacacagtgg
cgtccggagcagggtcggggctacgtagaggtcagtggagacggcagtagccagcatgaa
gggagcacctcagccagtgggctctccctaggggagtcaacggtcgcagaaggcctgtct
gtggtgctgccccctgagtctaccatgacttacccagagtatatcacctatctgggaaac
acgggaagaggggacgacctggacctggtggaggaaggccaggagctggaagaccatgag
cagaaagggcaggagcaagaagggctggaaggacccacggagacaatcaatgtcacggca
ccgtctgcattcttctctagcccaacaacagcaaccgccgtctcaatggtgacccctgtt
gtggtggaggagcctgctgtagttgacgctactcctgacctttgtgagcctaatccgtgt
ggcacgggcacctgttctgttcaggatggcattgctttgtgccaatgcccacatggattc
actggagaggactgcagcacatcagtgcagggctgtgccgaaggctggtgggagttcatg
gggagctgctacatgcactttctagagagagacacctggcccgacgctgagcagcgctgc
cagnagctcaactcccacctggtcagcatcacctcccaacaggagcaggagtttgtcaac
tctaacgctcaggactatcagtggattggactcaatgacaaggacgtgcagaataagttc
cgctggacagatgggagtccattggaatttgagaactggaggcccaaccagccggataac
tacttcaactctggggaggactgcgtcgtgatgatctggcatgagaacggccagtggaac
gatgttccctgcaactaccacctgcccttcacctgcaagagtgaacctgtcgtgtgccac
tccccccctgaggtgaacaacgccaggccgatgggcagcctaagagaccgctaccccgtc
aactctatagtcctctaccagtgtgatgcaggcttcacacggcgccacccgcctgttgca
cgctgccttcccgacgggcggtgggaggagccacaagtggagtgtataggacctggtgcc
acccccagcaacagactacataagaggtccatcaggagacggtctaaagcagccaacagt
cggtcatggcggaagcttctctaa
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