Salvelinus sp. IW2-2015 (Arctic char): 111962124
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Entry
111962124 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-6-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111962124
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111962124
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
111962124
NCBI-ProteinID:
XP_023840742
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Position
LG4q.1:29:51737290..51835328
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AA seq
754 aa
AA seq
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MMSSKRATPPFPPATEEEEAIGQDSVGWANEDRESHDQPVMPPLHGKPLPEEHQPIRDSQ
PESDWESIGPTQTDNASSKGCSLNSYRNNTISPPKPEECSQDCGELLGGSAFRTPERRKG
SLADVVDTLKQKKLVELTKTEQDESTCVETLLSRDWKDRRDRLNSSELLGEVKGTPESLE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAVSQMEKQRQQMELARQQQDQITRQQQQLL
QQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSMAAAXAQQGFLFPPNMSYKPGDNYPMQ
FIPSTMAAAAASGLSPLHQQLYAAQLASMQISPGAKMASLPQPQNSSGPLSPSALKSKKR
ASSPVTHIKEEGSTQPLNLSARPKTGEPHHSPSSPSHSLYPGNKSRPISMGKRRIPSPLS
NMGRGSLDILSSLNSTPLFGDQDAVMNAIQEARKMREQIQREQLHHQQQSLEAKLTALSG
MSFSNGSKERMHFESLSQHLGNLGEDGKMGHRVIDLTRHEDVDGVASTTEARVFRETRGR
NSTEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQ
AHLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFSVGPQPQIP
ISNSAGGLYPAAIAIATATPSPHLTSDCSSASASPEPAIPVTQSTFGVVKPKPVAMVTGD
HPVRGEDEIDVYEDFEDKSDYSSDRETREPVGAN
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccaagcgagccacacctccgtttcccccggcgacagaggaagaggaagcg
ataggtcaggacagtgtgggctgggccaatgaggacagagaaagccatgaccagccagtt
atgccccctctgcacggcaaacccctcccagaggagcaccagccaatcagagacagccag
cccgagtcggactgggagagtataggccctactcagacagacaatgctagtagcaagggc
tgttccttgaactcctaccggaataacactatatctccaccaaagcctgaggagtgttcc
caggattgcggcgagctgctaggcggatccgccttcagaacaccggaacgccgcaaagga
agcctggccgacgtggtggacacactgaaacagaagaaactagtagagctgacaaagaca
gaacaggatgagtctacctgtgtggagacacttctgtccagggactggaaagacaggagg
gacagactgaattccagcgagctcctaggtgaggtcaaaggtaccccagagagtttggag
gagaaggagcgtcagctttccaccatgattggccagctcatcagcctgcgggagcagctc
ctggcggcccacgacgagcagaagaagatggccgtctcacagatggagaagcagaggcag
caaatggagctggcccgtcagcagcaggaccagattacgaggcagcagcagcagctcctg
cagcagcagcataagatcaacgttctccagcagcagatacaggtgcagggtcacatgcct
cctctgatgatcccagtgtttcctcacgaccagcgatctatggcggccgctngcgcacag
cagggcttcctcttcccaccgaacatgtcctacaagccaggtgacaactaccccatgcag
ttcattccatccacaatggcagctgcagccgcttcaggactgagcccgcttcatcagcag
ctgtacgccgcccagctggccagcatgcagatctcgcccggagccaaaatggcctccctg
ccgcagcctcaaaactcctcaggccccctctcgccctctgccttgaagagtaagaagaga
gcatcgagtcctgtcactcacattaaggaggaaggatcgacacagcccctgaatctctca
gcccgacccaagactggcgagccccaccactccccatcctcgccgtcacacagcctgtac
cctggcaacaagagcaggcccatcagcatggggaagaggcgcatccccagccccctctcc
aacatgggcaggggctcactggacatcctgtctagcctgaactccacgccactgtttggg
gaccaggatgcggtgatgaacgccatccaggaggcgaggaagatgagggagcagatccag
agagaacagcttcatcaccagcagcaaagcctggaggccaagctcacggccctgagcggc
atgagtttcagcaatggcagcaaggagcggatgcactttgagagtttgagtcagcacctg
ggcaacctgggagaggatggaaagatgggccacagggtcattgacctcaccagacatgag
gatgttgatggtgtcgccagcactacggaggcccgggtcttcagggagaccaggggcagg
aacagtactgagccccacattaagagacccatgaatgccttcatggtgtgggccaaggac
gagaggaggaagatcctgcagaccttccctgacatgcacaattccaacatcagcaagatc
ctgggctctcgctggaagtccatgaccaaccaggagaagcagccatactacgaggaacag
gcccatctcagtaagatccacctggagaaataccccaactacaagtacaagccccggccc
aagaggacctgcatcatcgacggcaagaagctacgcattggcgagtacaagcagatgatg
cgctcgcggcgtcaggagatgaggcagttcttcagtgtggggccacagcctcagatcccc
atcagcaacagtgccggcggcctctacccggctgccatcgccatagcgacagccacgccc
tcaccgcacctgacgtcggactgctccagcgcctcggccagccccgagcccgccatcccc
gtcacccagagcacgttcggcgtggtcaagcccaagccggtcgccatggtgaccggcgac
caccctgttagaggagaggacgagatagacgtatatgaagactttgaggacaaatcggac
tacagcagtgaccgtgagacacgggagcctgtcggagccaactga
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