Salvelinus sp. IW2-2015 (Arctic char): 111962209
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Entry
111962209 CDS
T05762
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111962209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111962209
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111962209
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111962209
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111962209
NCBI-ProteinID:
XP_023840883
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Position
LG4q.1:29:complement(56475378..56504291)
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AA seq
567 aa
AA seq
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MFSATRKKFVEGVESDYPDEGMYYSQPLPFSHRSDKDLSALSARSHVPSTAPFELEMLSS
PSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTQLNRSLTQGTQLPSHITPTTGVPTMS
LHTPPSPSRGILPMNSRNMLNHSQVGQGIGMVSSRTNSMGSSGLGSPIRSSPSIICMPKQ
QPARQPFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRR
EGSGNPTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDFSIHNEDFPALPGPNY
KDPTLSNDDSKTNLNSTGKSTSIADGPMFPGDKTTSAQNNNQKKGIQVLPDGEPSQPITP
LRLDLGRVTNIPRGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENL
YPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDL
LQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKVKE
FHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtcgaaagcgactaccctgatgag
ggcatgtactacagccagccgttgccgttctcacataggtcggacaaagacttaagcgct
ctgtctgctcgatcacacgtccctagtacagctccctttgaacttgaaatgctctcgtct
ccctcaccgtcgtcatcaggtcaactgtcccagcttggtgccagtttatatggcccacag
agtgcactaggcttctcgataaggggcatgggaaacaacactcagttaaaccgcagctta
acgcaaggcacccagctaccgagccatatcacccccaccacgggggtgcccaccatgtcc
ctccataccccgccctcgccaagcagggggatcctgccgatgaactcgaggaacatgctg
aaccactcccaggtgggccagggtatcgggatggtcagcagcaggaccaacagcatgggc
agctcagggctgggcagccccatccgcagctcccccagcatcatctgtatgcccaaacag
cagcctgcacggcagcccttcaccatcaacagcatgtcaggattcgggatgaaccgaaac
caggcgtttgggatgaacaactcgttatcaagcaacatcttcaatggcacagacggtagt
gaaaacgtgacggggctagacctgtccgacttccctgcgttagcagacaggagtcggagg
gaaggaagtggaaacccaacgccgctactcaacccactagctggaagggccccctatgaa
gcctcttctcttcatctcatgacctcatcagttggcatggtgacgaagccatcgaacgag
ccgacgcaggatttctccatccacaacgaggacttccctgcactgcctggtcccaactac
aaggaccccacgttgagcaatgacgacagcaagacaaacctaaactctacaggcaagagc
acgtccattgcagatgggcctatgttccccggagacaagacgacctcagcacagaacaac
aaccagaagaaagggatccaggtgttacctgacggtgagccttctcaaccaatcacacct
ctccgtctcgacctgggacgggtgacgaacattcccaggggaatggtgacggaccagttt
ggaatgatcggcttgctgacatttattcgagcggcggagacggacccaggcatggtgcac
ctggcgctggggagtgacctcacaacactgggactcaacctcaactctccagaaaacctg
taccccaagtttgcttccccctgggcatcagcaccgtgtcgacctcaagacattgacttc
cacgtcccgtctgagtacttaaccaacattcacatacgggacaagctggcagctattaaa
ctggctcgttacggcgaagacctgttgttctatctgtactacatgaacggaggagacctg
ctacagctcctggcagcagtagagctcttcaatcgggactggcggtaccacaaggaggag
cgggtgtggatcacgcgggcgccgggtatggagcccacactaaagaccaacacctacgag
aggggaacctactacttctttgattgtcttaactggaggaaggtagccaaggtaaaggag
ttccacctggagtacgacaagctagaagagaggccccacgtcccgtctaccttcaactac
aacccagcccagcaggccttctga
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