Salvelinus sp. IW2-2015 (Arctic char): 111962348
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Entry
111962348 CDS
T05762
Name
(RefSeq) protein NLRC5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
salp04054
]
111962348
Pattern recognition receptors [BR:
salp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
111962348
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
Atypical_Card
LRR_8
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
111962348
NCBI-ProteinID:
XP_023841146
LinkDB
All DBs
Position
LG4q.1:29:complement(63989540..64010470)
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AA seq
1884 aa
AA seq
DB search
MEAEEDVQTVLTQETHELADILGYQDDALLAILYEMMDSRARERLMRPASHRERILELLS
YFRTADPAICRQFLQMVCMHCDMPMRLESRLMSVAGSVTSDPWPTPARETPSLCDPEEVI
ENNSHTLVDEYIPSQGWCVKRPRIDHVESYKAAVRRFLLQRWERVMQGVVTEVRLEEAWV
SLRHRTHVRPRDRADGALSPSELLQGDEEGTVEDRVTVHALLGSEAQVTLLLGQAGSGKT
LLMHCLGQKWTQGAFPSFHLLILLEFRQLNLVARPLSLKELLFRFFLPPEGGEEECTAVL
DFILENPEKICLIFDGYDEFHTKITHSGKLSSPFDPLCPLPMAELISGLCSRRILPGCTL
LITCRPRDVTDLESSVDCIGELLGFNQRSVKEYAEQYFQDKGLNLKEKAVSYLLANHHLL
TMCYLPALCHICCVCLDHIFSSGGSQLLPQLPNTLTQVYLQILCAFLSRCPGSSTPLLQS
HRAEVTLLGRLAMRGLEGSKIVFLSEEVPPDLVDFATKAGLLSQVDLTHEDGSKGQGYTF
MHLTMQEFLGALHIMTSEDITEAQLRKKFNVKTRWTTKSDPKTVFTDSLHLYVCGLAAPA
CSSYLLQLVRGVGAVGWVKKRLALVRKLLRSLAMSTNLTGPKVVELCHCVQETQDAQLAR
EMVGSRPCFELRNITLNPVDLDALAFVVSSAGVGIGLDFGACSMELECLDILPSCQHIDF
LIFRSRKYDDRFADKLSCILPRLPTLKRFEFICGNLTDVGAAKLARALESCPQITELNFS
DNSLTDRGVREIADIFPKLPSLASVSLGRNGCSLESIYILLEKIPSSPSIQGLYAEGMKD
VSVLFVPSLDMKCSKDKTGLTVSLLNCRFTTDQMNRLCQLLARCPGLSVLDLSGGDFNAD
TLKALTDSLQELNVSKQIVLNEIPISIDGLMVLTSFLSVCPDVVQVYISLQEPVRSSIFF
AGGIEKQHPEMSKKLCLIGCALRPPHLDHLCENLTDCSALTLLDISNNSLGNKGLKKLLD
LLPQFSTIQEINVSENAVSMEGVVLLADTLCSHRNMSEVNVSHGGKKLFLKFHSSKRIQS
EALRTSPDMEQDKKLSLTHSDIQPTDMTRLCRRLVQCPGLLKJDFSHGSLKDDAIENLLN
ILPKMTSLQLLNMSHVQMSTDGVLLLVRSLIDCQRVRAVELRPQGEAFIKFVNMKAEQAT
CRLTQYTLSSGDVEKLSGILAQCPHLSDLDLSSNLLRDEGVKSFVDSLPSLRIASSVNLN
DNRLTQMGALYLVNTVTTCEKVAAVEVSLGTEERSLIRFEQDSDCGKTLSLRECHFGADH
LQRLAEILTRCAAQLVKLRLSCNTLQREGLLALQNSLTTLSSLRTLEIRNNGLSVQVIED
LVKQLRCGHVQRYISIEEPWITAEAAVNLVSCCLNLNPNIHTIRVNKSTVHITLDECQNP
TATSGGTSTDMSGSLATVTISLVDCAVQGHHLVSLQTVFQRCVLLQELDLSLNSIGRVGA
ELLCSVLPSLASLRILSLESKETSEDVVLLLAEGLLQAKSIESLNLFGHVITDRGAVALT
RTLQNFPRLRTINLSLCYGWTPAGALELVRGLGQCLSLEGISLDSVQLDEESTVCLAQGL
HAMTSLKRLNLNNKVTMVTGSPWEGATLVLLASLEGLRGMEEIELEGMRMSDKGVEELIK
HLPTWTGLRKISLSGNCISDQAGERLVQALTTCTALEELNLSRNNLSLACAAKMGQVLPT
LTHFRVLDLSENEIGTKGSVSISKALISMKYLTKIHLTSIGTSELAGLADSLAHCVCAED
VSFAWNDCGDDVAVKLAEVLPQCQKLRRLDLESNXISTIGAEALARSLQSCPSVEVIRLW
RNVISTSDAQKLRQREKRLNFSST
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagaggaagatgtccagactgtattgacacaggagacccatgagctggcagac
attctgggctatcaagatgatgcacttctcgccatactctatgaaatgatggacagcaga
gcgcgggaacggctcatgcgccctgccagccacagagaacgcatcctggagttgttgagt
tacttcaggacagcagaccctgctatttgccgacaatttcttcaaatggtctgcatgcac
tgcgacatgccaatgcgtctggaatctcgactgatgtctgtggccgggtctgtgactagt
gatccttggcctacaccggcaagagagaccccatccctctgtgatccagaagaagtcatt
gaaaacaacagccataccctggttgatgagtatataccatctcaaggttggtgtgtaaaa
cgcccacgaatagaccacgtagaaagctacaaggctgctgtgaggagatttctactgcag
aggtgggagagggtaatgcagggtgtggtgacggaggttcgcctggaagaggcctgggtc
agtctgcgccacagaacccatgttagacccagagacagggctgatggagctctgagcccc
tcagagcttctgcagggggatgaggaggggactgtggaggacagggtgactgttcacgcc
ctcctgggttcagaagcccaggtcacactgctgttaggccaggcagggtcagggaagaca
ctactgatgcactgccttggccagaaatggacacagggcgcctttccctcctttcaccta
ctgatcctgctagagttccgccagctcaacctcgtggctcggccgctctctctgaaggag
ctgctctttcgcttcttcctaccaccagagggtggggaggaggagtgtaccgctgtactt
gacttcatccttgaaaaccctgagaaaatatgcttgatctttgatggctacgacgagttt
cacactaaaatcacccactcagggaaactgagcagcccatttgacccactgtgcccgctc
cccatggcagaactgatctcaggcctgtgcagtcgcagaatcctcccaggatgcactctg
ttgattacctgtaggcctcgggatgtgacagacttggagagctctgtggactgcattggg
gagctgctaggcttcaaccagcgcagtgtgaaagaatatgctgaacagtacttccaggac
aagggtctgaatctgaaggagaaggcagtgagttatctattggccaaccaccacctcctc
accatgtgttacctgccagccctctgccatatctgctgtgtgtgcttggaccacatattc
tccagtggtgggtctcagcttttaccccagcttccaaacaccctcacccaggtctacctc
cagatcctctgtgcctttctgagccgatgcccagggagcagcacacccctgttgcagagt
cacagggcagaggtcacactgctgggccgcctggccatgaggggcctggaggggagcaag
atcgtgttcttgtctgaagaggttccaccagacctggtggacttcgccactaaggctggt
ctcctctcacaggtggacctgacccatgaggatggatctaaaggtcagggctacacattc
atgcacctcaccatgcaagagtttctgggcgcgctacacatcatgaccagcgaggacatc
acagaggcccagctcaggaagaagttcaacgtcaagacccgctggactacgaaatcagac
cccaagacggttttcactgactccctccatctgtatgtttgtgggcttgctgcaccagcc
tgctcctcttacctgctccagcttgttcggggagtgggggctgtggggtgggtgaagaaa
cgcctggcactagttcgcaagttgctccgaagcctggcaatgagcaccaacctgactggg
ccgaaggtggtggagctgtgccactgtgtccaggagacccaggatgcccagctggccagg
gagatggtggggtcgcgaccctgctttgaactaaggaacatcacattgaaccctgttgat
ctggatgccctggcctttgtcgtctcgtctgctggagtgggcatcgggttggactttgga
gcctgttctatggagctggagtgtctcgatattctacccagctgccagcacattgacttt
ctaatttttcgaagccgtaagtatgatgacagatttgcagataaactttcttgcatcctt
cccagactaccaaccctgaaaagatttgagtttatctgtggtaacctcactgatgtggga
gctgccaaacttgccagagccctagagagctgtccacagatcacagagcttaatttcagt
gacaacagcctgacagacagaggagtcagggagatygctgacatctttcccaagctgccc
agtctggcctctgtctcgttggggaggaatggctgctctctggagagtatctacatcctt
ctagagaagatcccttccagcccctccatccagggactctatgctgagggaatgaaggac
gtcagtgtcctatttgtcccaagcttagacatgaaatgttctaaggataaaactggactg
actgtcagcctgttgaactgcagattcactactgaccagatgaacagactgtgtcagttg
ctagcgagatgtcctggtctctctgtcctggatctctcaggaggcgacttcaatgctgat
actctcaaggccctgaccgactctctacaggagctgaacgtctccaaacagattgttctg
aatgagattcccatatctattgatgggctgatggttctgaccagtttcctgtctgtatgt
cctgatgtggttcaagtgtacatcagcctgcaggagcctgtgcggtcgtccatatttttt
gctggggggatagagaaacaacatcctgagatgtctaagaaactttgtctgattggctgt
gctcttcgtccccctcacttggaccatctgtgtgagaatctgacggactgctctgctctg
actctgctggatatttccaacaattctctgggaaacaaaggtctaaagaagttgttagac
ctcttacctcagtttagcaccatccaggaaatcaatgtcagtgagaatgcagtcagcatg
gaaggggtggtactgctagctgacacgctctgctcacacaggaacatgagcgaagtgaat
gtcagtcatggggggaagaagctgttcctgaaattccattccagtaaaagaatacaatca
gaagcactcaggacctcaccagatatggaacaggataagaaactcagtctaactcacagt
gatatccagcccactgacatgaccaggctgtgtagaagactggtacagtgtcccggccta
ctgaagmtagatttctcccatggatccctgaaggacgatgccattgaaaatctattgaat
atcctgcctaagatgacatctcttcagctgctcaatatgagccatgtccagatgtctacg
gacggagtgttgttattggtcagatctctgatagactgtcagcgtgtcagagctgtggaa
ctcmggccccaaggagaagcgttcatcaaatttgtcaacatgaaagcagaacaagcaact
tgcagactcacccagtacacactgagcagtggggatgtggagaaactctctgggatcctg
gcgcagtgtcctcatttgtctgacctggatttatccagtaacctcctgagagacgaggga
gtgaagagctttgtggattctctgccaagcctgcggattgccagctcagtgaatcttaat
gataacagactgacccagatgggggcgctctacctggtgaacacagtgacgacctgtgag
aaggtggctgcagttgaagtcagtttgggaactgaggagaggtcgctcatccgctttgaa
caggacagtgactgtggcaaaactctgagtctgagagagtgtcattttggggctgaccat
ctgcagagacttgcagagattctgacacgctgtgctgctcagttggtcaaactgaggtta
tcctgtaacaccctgcagagagaaggcctactggctctgcagaacagcctgactaccctg
tcctcattacgcaccctggagataagaaacaacggactgagtgttcaggtgattgaagac
ttggtgaagcagctgaggtgtggtcacgtccaacgctatatcagtattgaggagccatgg
atcacagcagaagcagctgtaaacctggtctcctgctgcttgaacctgaaccccaacata
cacaccatyagggtaaataaatccactgtacacattactttggacgaatgccaaaatccc
actgctaccagtggtggcacttctacagacatgtctggctctctggctaccgtgaccata
agcctggtagactgtgcagtgcaagggcaccacctagtgtctctgcagactgtgtttcag
aggtgtgttctgctacaggagctagatttgtcattgaacagcattggtagagtgggagca
gagttgctctgctctgtcctaccatccttagctagtctgaggatactcagtcttgaatca
aaagaracctctgaagatgtggtattgctccttgccgaggggttgttgcaggctaaaagc
attgagagcttaaatttgtttggtcatgtgattactgacagaggagctgtagctctgacc
agaacactccaaaactttcctcgtctcagaacaatcaatctgtccctctgctatggttgg
acaccagcaggggccttggagctggtgagagggctgggacagtgcctctctctggaaggg
atcagccttgactctgtacagctggatgaggagagcacagtgtgcctggcccaagggctc
catgctatgacctccttgaagaggctgaatctgaataataaagttaccatggtgactgga
tccccatgggagggggccactctggtcctgctggcctctctggaggggctcagagggatg
gaggagatagagttggaggggatgaggatgtcggataaaggagtggaggagcttatcaaa
cacctgcccacctggacaggcctgaggaagatcagcctgtcaggaaactgcatcagtgac
caagcaggagagaggctggtccaggccctgacaacctgcacagcactggaggagctcaat
ctgtccaggaacaatctcagccttgcctgtgctgccaagatgggacaagttctgcccact
ctcactcacttcagggttctagatctctcagagaatgagattggtacaaaaggatctgtc
agtatctccaaagccttgatctccatgaagtatttgacaaagatacacttgacctccata
gggacttcagagcttgctggtctggctgacagcctggctcactgtgtctgtgcagaggat
gtcagttttgcgtggaatgattgtggagatgatgtcgcagtgaagcttgccgaggtttta
ccacaatgccagaagctaaggagacttgatctagagtctaacagkatcagcactattgga
gcagaggcacttgccagaagcttacagtcttgtccatcagttgaagtgatcagactgtgg
aggaatgttatttctaccagtgatgcccagaaactgagacagagagagaagaggctcaac
ttctcctccacatag
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