Salvelinus sp. IW2-2015 (Arctic char): 111962375
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Entry
111962375 CDS
T05762
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111962375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111962375
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111962375
mRNA degradation factors
5'-3' decay
Decapping complex
111962375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
Pdc1_Ge1
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
111962375
NCBI-ProteinID:
XP_023841186
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All DBs
Position
LG4q.1:29:65129150..65175519
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AA seq
1417 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGADLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGPMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGFSDHLTDMSVEVLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLM
TPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGARGGEELTQSPKMSVESNSILISG
LGDNMPMYHLPQETTPHTLMFPFTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQASPTRA
RSPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESRETLPALHTDSMASAASALHLLS
PRNRNSSDHGHLPLELGAVVEAEQRLSNTPSLLENALSQENAAAAAAASCSDNNVSHPWP
AAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDE
VASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEQHHQQ
MNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHE
QRRMERILAEGHSRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPTITKSLEP
VTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGI
VLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQLQQMIDTF
QNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQQAAVNSS
IMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVLYVCETID
SQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSAV
LSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaacagcgttgatgcttctccaagtgagaaccaaagcaaaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacactcaagagtgtcag
atcatctgcctctctggggatgatggttccacttgcattcccatcacatccaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagtaaggcacgtggcagcaacaaggta
aaaatccarcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcagtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgttgaagggcttcactggtgcagtc
acagacctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatccaggatcaagtcattgtc
cacgtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccttactg
catgaagacagagctgaagtgtgggatctagagatcctccgcagcaacaatagcacctgg
ccagtagatgccactgacctgaaggacggagttataaccataaaaggacatacagatcgt
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
ttcctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccaccagacgaggagagcgagagtatgactgcagatggcaac
cagggaccaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctcatccttgttc
ctgcctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagt
gtggaagttttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaag
attcccgctcttgctgacttcctgtccccctccggcactgctgctatgcccaagctcatg
acccctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgccaggggagga
gaggagctgacccagagccctaagatgtctgtggagagcaactccatcctcatctcaggc
ttaggggacaacatgccgatgtaccatcttccacaagagaccactcctcatacgctcatg
ttccccttcacctaccccctccgccctctacaggggcttccctctccaaacccgcccctc
tcgctggacccgcaggtcattgagcctatgctgattcagcaggcctctcctacccgggcc
cgctctcccgacgtcatctcatctgcctccacggccatgtctcaggacattcctgagatc
gcctctgagacgctgcagcgaggcctaggaggggtgtctggagctgaatctcgagaaact
ctcccagccctccacacagacagcatggcttctgcagcctcagctcttcacctcctctct
ccacgaaaccggaacagctctgaccatggccacctgcccctggagctgggtgctgtagtg
gaggctgaacagaggctcagtaacaccccctcactactggagaacgccctgtcacaggag
aatgctgctgcagccgccgctgcctcctgctcagacaacaatgtgagccacccgtggcct
gcagcgcctgacatcacacgggaaacacgcaacagcctgcgagacaatggcctgggagac
tgctcgagggaggaaattaaggacagacacatgtcctctccataccacagacgcacctac
cacttaacccagaatgacagtcaggacgccagtgcagaacagagtgaccatgacgatgag
gtggccagtctagagtcgtcttcagggaactgtggagccaggtcgtctcaaagactgcca
gtgaaggagtggaagagttctcccagaggctcccctaaactaaagaggaagagtaaaaaa
gatgacggggatgcatctcatgcctctcagtccaggcagcctgagcagcatcatcagcag
atgaatccagaggtgctggaagagctcctgattttgctccgtaaccagcagagggagata
gcggagctccatcagagtcagctggagctgcttcagagagtgacgggccacatggatgcc
gtgcagagctctgtcatagcccacgtagagcacgtcatggtcagccagcaggagcacgaa
cagaggagaatggagagaatcctagcagagggacacagccgtaaccagcagctccaggag
catctctcgcagcagctgggtcaaactctcagtaacaccctttgtaatcgtctggacaag
actctccgagaggagatgaagaagactgttcctcccactatcaccaagagcctggagcct
gtcactgcccagatgagtaacaccattgctgctaagctgactgctgtggaggcagcactg
aaggagaacgttagcaaagttgtgaagtcaaagaacaccacagatgctattggccgtgca
gctgccgaggcaatgcaggggcctatccaggctgcctacaaggatgctttccagggcatt
gtgctgcctgtgtttgagaggggctgccagtctatgttccagcagatcaatgagagcttc
aagcagggcacccatgagtatatccagcaactggagacccatgtgaagaacaagaagcag
catgagcaggaagcacgggatcctatgattggccagctgcaacagatgattgacacgttc
cagaactcaacggatcagctggccaccaccatcacagcaagtgtccgctctgaggtccag
catcagctccacatgacggtgggaaacttgcaggactcgatcctgacccaggtgcagcgc
attgtgaagggtgaggtgagtatggccatgaaggagcagcaggcagctgtgaactccagc
atcatgcaggccatgcgctctgctgcaggcacgcctgtccccaccgcacacctggactac
caggcccagcaagccagcatcctgcagctgctgcagcagggacagctcaaccaggccttc
caacaggccctgtcagcctctgacctgaacctggttctgtatgtgtgcgagaccatcgac
tcccagcaggtgtttggccagcatccctgccccctcatccagccagtgctgctgtccctc
atacagcagctgtccactaacctggccacacgctctgagctcaagatcagttacttggag
gacgctgtgatgaacctggaccatggtgatccggtgacgagggaccacatgagtgcggtg
ctgtcccaggtccgacagaagctgttccagttcctgcagtcagacccacacagtcctctc
agcaagagagcccggcgcctggtgatgatgcttcagggcctggtcaatcactag
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integrated database retrieval system
