Salvelinus sp. IW2-2015 (Arctic char): 111962411
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Entry
111962411 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear receptor ROR-alpha-like
KO
K08532
RAR-related orphan receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111962411
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111962411
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
111962411
Nuclear receptors [BR:
salp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
111962411
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
111962411
NCBI-ProteinID:
XP_023841252
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Position
LG4q.1:29:complement(67655285..67940852)
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AA seq
528 aa
AA seq
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MESPPDPASDPGNSASEPATPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPG
EAEPLTPTYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDIN
GIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQ
MTWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
AGSLEVVFVRMCRAFDSXNNTVYFDGKYAGPDVFKSLVSCDDLISSVFECWKNLCSMHLS
EDEIALFSAFVLMSAGRRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccgggcaacagcgcctctgagccggctaca
ccggccagggaaaccccggtaaacctagagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagtaccaacagaggtggactcacgaacaagcaaggtatt
tcagtaacaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgtgagggctgtaagggcttcttc
aggaggagtcagcagagcaatgcggcttactcatgcccccgtcagaagaactgcctgatc
gaccgcaccagccgcaaccgctgccagcattgccggctgcagaaatgtctggcagtgggc
atgtcaagggacgcggtaaagtttgggcgcatgtcgaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgggaccaccagcagcagcccggc
gaggccgagccgctcacacccacctacggcctctcggccaatggcctcacagagctccac
gacgacctcagtggctacatggatggccacacccctgacggcagcaagcccgactcagca
gtcagtagcttctacctggacatccagccctcccctgaccagtccggactggacatcaac
ggcatcaagcccgagcccatctgcgacttcgcccccggctcaggcttcttcccctactgc
tcctttaccaacggagagacatcccccactgtgtccatggctgagctagagcacctggcc
cagaacatctccaagtctcacatggagacgtgtcagtacctgagagaggagctgcagcag
atgacctggcaggccttcctgcaggaggagatggagagctaccagaccaagccccgagag
gtcatgtggcagctgtgtgctatcaaaatcacagaggccatccagtacgtggtggagttt
gccaagcggatcgacggcttcatggagctgtgtcagaacgatcagatagtgctgctgaaa
gcaggctctttggaggttgtgtttgtgagaatgtgccgtgccttcgactctncaaacaac
acagtctatttcgatggaaagtatgctgggcctgatgtgtttaagtcattagtaagctgt
gacgacttgatcagctccgtcttcgagtgttggaagaacttgtgttctatgcacctgtct
gaggatgagattgccctgttctctgcgttcgtgttgatgtctgcaggtagacggtcctgg
ctccaggagaaggtgaaggtggagaaactccagcagaagatccagctggcactgcagcat
gtcctgcagaagaaccacagagaggacggcatacttaccaagttgatatgcaaggtgtca
acactgcgagcgctgtgcagcaggcataccgagaagctgacggctttcaaagcaatatac
ccagacattgtgcgtgcccacttcccccccttatataaggagctctttggatcggacttt
gagcagtccatgcccgttgacgggtag
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