Salvelinus sp. IW2-2015 (Arctic char): 111962579
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Entry
111962579 CDS
T05762
Name
(RefSeq) interferon regulatory factor 3-like
KO
K09447
interferon regulatory factor 7
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04620
Toll-like receptor signaling pathway
salp04621
NOD-like receptor signaling pathway
salp04622
RIG-I-like receptor signaling pathway
salp04623
Cytosolic DNA-sensing pathway
salp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
111962579
04621 NOD-like receptor signaling pathway
111962579
04622 RIG-I-like receptor signaling pathway
111962579
04623 Cytosolic DNA-sensing pathway
111962579
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
111962579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111962579
Transcription factors [BR:
salp03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
111962579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
OYE-like_second_a-b
Motif
Other DBs
NCBI-GeneID:
111962579
NCBI-ProteinID:
XP_023841510
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All DBs
Position
LG4q.1:29:complement(77476015..77480855)
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AA seq
455 aa
AA seq
DB search
MTEVRGSALKMQSRNPKPQFADWLIEQVWTGQYAGLCFVDNNKFRVPWKHISRKDCCEDD
SKIFRAWAVVSGKINTHPNDKAKWKTNFRCVLNNLTKRFMMVEDHSKDSDDPHKVYLIIN
NESNYGSPHIEEIAVEDYDIDIQSSLTSTGYTPPGMEHDNLLKLVNTLDLNQHTEEWAEN
YIHTHHPVVPEDCYPFQPLTEPQPVSQNHSPPPVPVPVQQPYDHVNQDALLNLPAAQPSL
CDLEITIFYRRREMMKTQVSSPMVQLHYQCDVPEPNAQTLCFPSTDGLLDHKQIEYTNCI
LGSVQRGLLLEVRNTGIYGYRQDKCHVFSSTSDPREAHPEPRKMPQNEMVQLLSFDKYMT
ELTAFKENRGGSPDYTIHMCFGEKFPDGKPLEKKLIIVKVVPLICRHFHEVAQGEGASSL
QNDNISLQISHHNSLMELISATWPDGPEHTMGQYF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtacgtggctcagcattaaagatgcaaagccgcaaccccaaacctcagttt
gcygactggttgatagaacaggtgtggaccgggcaatacgccgggttgtgttttgtggac
aacaacaagttcagagtcccgtggaaacacatctctaggaaggactgctgcgaggacgac
agtaaaatattcagggcatgggcagtggtcagtggtaaaatcaacacgcatcccaatgac
aaggcaaagtggaagactaacttccgctgtgtattgaacaacctgaccaagcgtttcatg
atggtggaagaccactccaaggactcagacgacccccataaagtctacctgattatcaac
aatgagtctaactatgggagcccacacatagaggaaattgctgtggaggactatgacatt
gacatccaragctctctcacctctacaggctacacccccccaggcatggagcatgataat
ctactcaagcttgtgaacaccttagacctgaaccaacacactgaggagtgggcagagaac
tatatacacacacaccacccagtggtaccagaagactgctaccccttccagcctctaaca
gagccccagccagtctcccagaaccactcaccaccaccagtcccagtaccagtacagcag
ccatacgaccacgtgaaccaggatgccctgctcaacctgcctgctgcccagccgtctctc
tgtgacctggagatcaccatcttctacaggaggagagagatgatgaagacccaggtgtca
agccccatggttcagctccattaccagtgtgatgtccctgagcccaacgcccagaccctc
tgcttccctagcactgacggcctgctagaccacaaacagattgaatacaccaactgtatc
ctagggagcgtccaaaggggtcttctcctggaggtacgaaacacgggtatctatggttac
cggcaggacaaatgccatgtgttctccagtactagtgaccccagagaggcacaccctgaa
cccaggaagatgccccaaaatgaaatggtacaactgttgagcttcgacaagtacatgact
gagctgacagcatttaaggagaacagaggaggctctcctgactataccatccatatgtgc
tttggagagaagttcccagacggaaaacccctggagaagaaactcatcattgtcaaggtg
gttcccttgatctgtcgtcacttccacgaggtggcccagggggagggggcgtcttccctc
cagaacgacaacatcagcctgcagatctcccaccacaacagcctaatggagcttatcagt
gccacctggcccgacggcccagagcacaccatggggcaatacttctag
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