Salvelinus sp. IW2-2015 (Arctic char): 111962718
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Entry
111962718 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: cystic fibrosis transmembrane conductance regulator-like
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp02010
ABC transporters
salp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
111962718
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
111962718
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
salp02000
]
111962718
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
111962718
Transporters [BR:
salp02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
111962718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
DUF87
AAA_29
AAA_16
SMC_N
RsgA_GTPase
T2SSE
FtsK_SpoIIIE
nSTAND3
MMR_HSR1
AAA_23
NB-ARC
nSTAND1
Dynamin_N
ATP-synt_ab
MeaB
AAA_30
DO-GTPase2
NTPase_1
Motif
Other DBs
NCBI-GeneID:
111962718
NCBI-ProteinID:
XP_023841787
LinkDB
All DBs
Position
LG4q.1:29:complement(86291998..86382837)
Genome browser
AA seq
1518 aa
AA seq
DB search
MQKSPVEDANFLSKYFFWWTSPLLRKGFRKKLELTDVYKAPYFDLADNLSERLEREWDRE
VASAKKKPRLLRALSRCFLWPFVFYGILLYFGEASKTVQPQLLGRIIGSFDPIHAPEREQ
GYYLALGLCLLFTARFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDEGLVFGLAHFVWITPLQCILCVGLIWELIEVNGFLCLGCLTLLGIIQ
ACLSRRWASQVAGLISRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMTLTRKIG
SLRYFYSASYFFSAILVIVSAIVPHALSKGIILRSIFTTASYLMVLRMTLTRQLPGSIQM
WYDTLALVTKIEEYLCKEEYKVLEYNLTTTEVELVNVTASWDEGIGALFEKIKQENNSNG
HPNGDVGLFFTNLYVTPVLKNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGKI
KHSGRISFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDLSLLPEKDKTPLM
EGGVTLSGGQRARIGLARPMYKDADLYLLDSPLHPTXPIVDGERDLERCLCKLMSSKTRI
VVTSKLDHLKRADKILLLHNGVCYFYGSFSQLQAKRPDFSSLLLGLEAYDNIKAERRSSI
LTETLRRVSIDESAVLRGPEPIRQSFRQPPPSVINGITGPQGITIAGGDSLTVVEKRKQS
IILNPLATARKFSFISTGPQNSQAPTPGSTTIEDGVRELSERKFSVVPEDDQVEESLPRG
NLYHDGLQHLSGQRRQSVLQFITNAQGQGRREQLQTSFRKKLSVTPQCELASELDIYARR
LSKDSVYNISEDVDEEDMEQCFADERENVFETTSWNTYLRYIFTNRNLVYVLIFIFLIFA
LEVAGSVLGIFLITDKIWTEEANPLAPNYVDQQHSNASSHAVQQSVIVTPTSAYYIIYIY
VATSESVLALGFFRGLPLVHTLLTVSKRLHEQMLTAVLRAPMAVLNTMKTGRIMNRFTKD
MATIDDMLPLVLFDLIQLTLIVLGAIFTVSIMRPYIFIAAIPLAVIFVVLRKYFLRTGQQ
LKQLEAEGETALSSLTSSSSKGSVDIRAFGRQCYFETLFHKXLNTHTAIWFHYLSTLRWF
LFRCDIIFVFFFSAAAFIAVGTNQDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRS
VDRVFKFIDLPQEEPRPSGGGKVTDLVLDNPHAQDCWPNQGHMDVQGLTVKYTEAGRSVL
QNLSFTVEAGQSVGVLGRTGSGKSTLLSALLRLASTEGEISIDGVSWNSVTLQTWRKAFG
VVPQKIFILTGTFRMNLDPHACHSDEELWRVAEEVGLKSVIEQFPDKLDFQLEDGGYVLS
NGHKQLMCLARSILSKARILLLDEPSAYLDPITLQVLRKTLKQSFSNCTVILSEHRVEPL
LECQSFLMIEGSSMKRYDSIQKLLNETSHLKQAISAAERLKLFPLHRLNSSKRPPQSQQS
KITALQEEAEDEVQDTRL
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacccgtggaagatgcaaacttcctctccaaatatttcttctggtggaca
tctccactgttgaggaagggcttcagaaagaagttggagttgacagatgtttataaagca
ccatattttgatctcgcagacaatctttctgaacgactagaaagagaatgggatcgagaa
gtggcatcggccaagaagaagcctcggctcttgcgggcactctcccgttgtttcctctgg
ccttttgtgttctacggaatcctgctgtactttggggaggcgtcgaagacagtgcagccc
cagctcctgggtcgtataatcggctcgtttgaccccatccatgcccctgagcgggagcag
ggttactacctagccctgggtctctgtcttctcttcactgctcgcttcctgctcctgcag
ccagccatctttggactgcaccacctgggcatgcagatacgcatcgctctcttcagcctc
atctataagaagactctgaagctgtccagccgagtcctggacaagatcagcacaggtcag
ctggtcagcctgatgtcagcccacctcaacaagctggatgagggtttagtctttggcctg
gcacactttgtgtggatcacccctctgcagtgcatcctgtgtgtggggttgatctgggag
ctgatcgaggtgaatggttttctgtgccttggctgcctcaccctgctgggcatcatacag
gcctgcctctctagaagatgggcctcacaggtggcagggttaatcagcaggcgtctggct
ctgacctcagagatcgtagagaacatccactcagtgaaggcctacggctgggaggaggtg
atggagaccatcatcaagaacatcagacaggatgagatgacgctgacgaggaagattggt
tctctgcggtacttctacagcgcctcctacttcttctctgccatcctggtcattgtgtca
gctatcgtgccccacgccctcagcaagggcatcatcctgagaagtatcttcaccactgcc
tcttacctcatggtgctccgtatgaccctcaccagacagctgcccggctccatacagatg
tggtacgacaccctggcgctggtcacaaagatagaggaatacctctgtaaagaggagtac
aaagtattagagtacaacctgaccaccactgaggtagagctggtgaacgtgactgcctcc
tgggatgagggtatcggggcgttgtttgagaagataaagcaggagaacaaytctaacggc
caccctaacggmgacgtagggctgttcttcaccaacctatatgttacacccgtcctcaag
aacatcagcctgtatctggagaagggacagatgctggccgtggctggatccaccggctcc
ggaaagagttccctmctgatgatgatcctgggagagctggtcccgtcagaggggaagatc
aaacacagtgggcggatctccttctccccccagacctcctggatcatgcccggaacratc
cgtgacaacatcctgtttggtctgacctacgacgaattccgctacacctctgtcatcaag
gcatgtcagctggaggaggatctgtccctgctgccggagaaagacaagacgccccttatg
gagggaggggtgaccctaagtggaggtcagagggcgaggataggtctggccaggccgatg
tacaaagatgccgacctctacttgttggattcgccccttcaccccacctgacccattgtt
gacggagaaagagatcttgagaggtgtctgtgtaaactgatgtcctccaagactcgtatc
gtggtcaccagtaagctggaccaccttaagagagcagacaagatccttctgcttcacaac
ggagtgtgttacttctacggctccttctcccagctgcaggccaagagaccagacttcagc
tccctgctcctgggcctggaggcctacgacaacatcaaagccgaacgccgcagctccatc
ctcacrgagaccctccgacgtgtctccatcgacgaatccgccgtcctccgtggccccgag
cccatccgccagtccttccgccagcccccgccttcggtcatcaacggcatcacgggacct
caaggcatcaccatcgccgggggcgacagtctcacagtggtggagaaacgtaaacagtcg
attatcttaaatccattagcaacggcacgtaagttctccttcatcagtactgggccccaa
aacagccaggctccaaccccagggtccactaccatcgaggatggcgtgcgagagctgtcg
gagaggaagttctctgtggtgcccgaggatgatcaggtggaagagtcgctgccccggggg
aacctgtaccacgacggtctgcagcacctgagtgggcagcggcgccaatctgtgctgcag
ttcatcaccaacgcccaggggcagggcaggagggagcagctccagacatccttcaggaag
aagctgtccgtcacgccgcagtgcgagctggcctctgagctggatatctacgcacgacgc
ctgtccaaagatagtgtctataacatcagtgaggatgtggatgaggaggacatggagcaa
tgctttgcagacgagcgtgagaacgtgtttgagacgacgtcgtggaacacctatctgcgt
tacatcttcaccaacaggaacctggtctacgtcctcatcttcatcttcctcatcttcgct
ctcgaggttgctggctctgtcctggggatatttcttatcacagataagatctggacagag
gaggccaacccattggcgcctaactacgtagaccaacaacactccaacgcctcgtcacac
gccgtccaacagtcagtcatcgtcacgccaaccagcgcctattacatcatctacatctac
gtggcgacgtcggagagcgttctggcgctggggttcttcagaggcctgccactggtccac
accttactgaccgtgtccaagaggctgcatgaacagatgctgaccgctgtgctcagggcc
cccatggctgtactcaacactatgaaaacaggtcggatcatgaacaggttcactaaagac
atggccaccatagacgacatgcttcctcttgtactgtttgacctcatccagttaactctg
atcgtgttgggagcaatcttcactgtgtccatcatgcggccgtacatcttcatcgcsgcg
atcccattggccgtcatatttgtggtcctgaggaagtacttcctgcgtaccggacaacag
ctcaaacaactagaagctgagggtgagactgccctatcttctctcacctcatcatcttct
aaagggtctgtggacatccgtgcgtttggacgtcagtgctactttgagacgttgttccac
aagngcctgaacacccacacagccatatggttccactacctctccacgttgcgatggttc
ctcttccgctgtgacatcatcttcgtcttcttcttcagcgccgcagccttcatcgccgtg
ggaaccaaccaggacaagccaggggagattggcatcatcgtggccttagccatgcttatc
cttggtacgttccaatgggctgtcatcaccagcatcactgtggacggactgatgcgatcg
gtagatcgggtcttcaagttcatcgacttgccgcaggaggagcctagacccagtggtggt
ggtaaagtcacagacctggtcctcgacaacccccacgcacaagactgctggcccaaccag
ggccacatggatgtccaggggctgactgtcaagtatacagaggccggacgctctgtgctg
cagaacctgtccttcaccgtggaagcgggccaaagtgtgggtgtgttggggaggacgggc
tcagggaagagcaccctgctctctgccctgctgcgcctggcctctacagarggagagatc
tccattgacggggtctcctggaactctgtcacactacagacctggagaaaagccttcgga
gtggtgccacagaaaatcttcatcctgactggaacattccgtatgaacctggatccgcac
gcttgccacagtgacgaggaactgtggcgggtsgctgaggaggtgggtctgaagtcagtg
atagagcagttcccagacaagctggacttccagctggaggacgggggttatgtcctgagt
aacggacacaagcagctcatgtgtttggcccgctccatcctcagcaaggcccgcatactg
ctgctggacgaacccagcgcctacctcgaccccataacgttgcaggtcctgaggaagacg
ctgaaacagtctttctccaactgtacagtcatactgtcagaacacagagtggaaccactg
ctggagtgccagtccttcctgatgatcgagggcagttctatgaagcggtatgactccatt
cagaagcttttgaacgagaccagccacctgaagcaggccataagtgctgctgagcgcctc
aaactcttccccctgcaccgcctcaactccagcaagcgaccccctcaatcccagcagtct
aagatcaccgccctgcaagaggaggctgaggacgaggtccaggacacacgtctgtaa
DBGET
integrated database retrieval system
