Salvelinus sp. IW2-2015 (Arctic char): 111962998
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Entry
111962998 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 3-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111962998
Transcription factors [BR:
salp03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
111962998
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
HLH
PAS_4
Motif
Other DBs
NCBI-GeneID:
111962998
NCBI-ProteinID:
XP_023841991
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Position
LG4q.2:20837664..21195563
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AA seq
957 aa
AA seq
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MIRIFPDFSVQVTAAGGGAGGMPSGHAMGRVPGSTNGNPQNVQGITSYQQRLQALRKEKS
RDAARSRRGKENFEFYELAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNL
RMEGPPPNTSVKAIGDQRRRTPSAVASEIFEPHLGSHILQSLDGFVFTLNKEGRFLYISE
TVSIYLGLSQVELTGSSVXDYVHPGDHVEMAEQLGMKLXPGRGLLSQGTATEDGASSASS
SSHAETPEPVESTSPSLLSPDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRIR
MALTHSRSVPIQIMGMVVVAHALPPPTINEVRIDCQMFVTRVHMDLNIVYCENRISDYMD
LMAVDIVGKRCYQFIHAEDVDGIRHSHLDLINKGQCVTKYYRWIQKNGGYIWIQSSATIA
INAKNGNEKNIIWVNYVLSNPEYKDTPMDIAQLPNLPEKASESSETSDSESESKDNSDDN
ENSKWDRKGNQTENTEDPETDSKKQQQGQSSSEQEMRHQEEGDSSSNPESQESEDDLEPS
DCEVETKEGRLGRLEDLHIKVEHYGDGNGGVDLHDSPSSSEEEEDDDDDKEHDDSFKDCD
SATETLAAPAASKQQKRKKRRKKQKWDGSRTKRLCLSSATPSSNTFVGAVPLLPPPSPAS
ASVLKIKTEMSEPINFDNDSIIWNYPPNREISRNESPYSMTKPVPAHDTFPSPQPGSLQV
SIPDSVLTPPGTEGGSGGAGTRKGVPPSFSGYSSAPSSASSAASLAPPSGSGSSSDPLSP
PLSASPRDNQQCQSTPTTSGSSLLYTSDLEALQRLQAGNVALPLVQRVTGTLATTSTAAS
RVYTTGTIRYAPADVTLAMQAGANLLPHNVAHTMNFVDVNGSPSFGIDPKTPMEMLYHHV
HRLNMAGPFGGTMSGASLTQMPAANVFTTAEGLFSTLPFPVYSNGIHTTQTLERKDD
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgatcagaatcttcccggatttcagcgttcaggtgacggcggcaggtggaggagccggg
ggaatgccatcaggtcacgccatggggagagtcccgggttcaactaacgggaacccgcag
aacgtccaggggatcacctcgtatcaacaaaggttgcaggctctgaggaaggagaagtcc
cgggatgcggctcgctcgcggcgggggaaggagaactttgagttctatgagctggctaag
atgctgcccctgcccggcgccatcaccagccagctggacaaggcttccatcatccgcctc
accatcagctaccttaagatgagagactttgccaaccagggggacccgccatggaacctg
cgcatggaaggcccaccgcccaacacctccgtcaaagctataggagatcagcgaaggagg
actcccagtgcggtagcctcagagatcttcgagccacacctcggaagccacatattgcag
tccctggatggatttgtatttacactaaacaaggagggaaggtttttgtacatctctgag
acggtgtctatatacctggggctttcgcaggtggagctgacaggaagtagtgtanttgac
tacgtccaccctggtgatcatgtggagatggcagagcagctgggcatgaagctgnccccg
gggcgaggcctcctttctcagggcaccgccaccgaggacggcgccagctctgcctcctcc
tcctcacacgcagagacccccgagccagttgagtccaccagccccagcctgctttcccca
gacaacactctagagcgctccttcttcatccgtatgaagtccacactgaccaagagaggt
gtccacatcaagtcttcaggctataaggtgatccatgttacaggcaggctgaggatccgt
atggcattgacccacagtcggtcggtacccattcagatcatgggcatggtggtggtagcc
cacgccctccccccccccaccatcaacgaggtgcgcatagactgccagatgtttgtcacc
agggtccacatggacctcaacattgtctactgtgagaatagaattagcgactacatggac
ctgatggcagtggacatcgtagggaagaggtgttaccagtttattcatgcagaggatgtg
gatggcatccggcacagccatttagacttgataaacaagggccagtgtgtgaccaagtac
taccgctggatccagaagaacggtgggtacatctggatccagtccagtgccaccatcgcc
atcaatgccaagaacggcaatgaaaagaacataatctgggtcaactacgtactcagtaat
ccagagtacaaggacacgcccatggacatcgcccagctacccaaccttccagagaaagcc
tcagagtcttcagagacatccgactctgagtccgagtccaaggacaactctgacgacaac
gagaactccaagtgggacaggaaggggaaccagactgagaacacagaggacccggagaca
gacagtaaaaagcagcagcagggccagtcatcctcagagcaggagatgaggcatcaggag
gagggagacagctcctccaacccagagagccaggagagcgaggacgatctggagcccagc
gactgtgaggtggagaccaaggagggcagactgggccggctggaggacctgcacatcaag
gtggagcactacggagacggaaacggaggggtggacctgcacgactcgccgtcctcctct
gaagaagaggaagatgatgatgacgataaggaacatgacgacagcttcaaagactgtgac
agcgccaccgagactctcgccgcccccgctgccagtaagcagcagaaacgtaagaagagg
aggaaaaagcagaaatgggacggtagtcgtactaaacgcctgtgcctctcctctgccacc
cccagctctaacacctttgttggggctgtccccctcctgccgcccccctcccctgccagt
gcctctgtgctcaagatcaaaacggaaatgtccgagcccatcaacttcgacaatgacagc
atcatctggaactacccacccaacagagagatctccaggaatgagtctccctacagcatg
acgaagcccgtcccagcccacgataccttcccctccccacagcctggtagtctgcaggtc
tccatcccagactcagtgctcactcccccaggaacagaggggggcagtgggggtgcaggt
accaggaagggcgtacccccctccttcagcggttatagcagcgccccctcctcggcctcc
agcgccgccagcctggcccctccctccggctctggatcctcctccgaccccctgtccccg
cccctctcggcctcgccgcgcgacaaccagcaatgtcagagcacccccaccacgtccggc
tcctccctgctgtacaccagcgacctggaggccctgcaaaggctgcaggccgggaacgtg
gcgcttccactggtccagcgggtcaccggcaccctcgccacgaccagcactgctgcctca
cgggtctacaccactggcaccatccgctacgcccctgccgacgtcactctggccatgcag
gcaggcgccaacctgctaccccacaatgtggcccatactatgaactttgtggatgtcaac
ggtagccccagcttcggcattgaccccaagacgcccatggagatgctgtatcatcacgtc
caccggctcaacatggctggcccttttgggggtaccatgtccggcgccagcctcacccag
atgccagcagccaatgtattcaccaccgccgagggactgttctccactcttccattccct
gtctacagtaacgggatacacaccacacaaactctggagcgcaaagatgattag
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