Salvelinus sp. IW2-2015 (Arctic char): 111963091
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Entry
111963091 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111963091
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111963091
microRNA pathway
RISC loading complex
111963091
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_PBD
Dicer_dimer
PAZ
Dicer_platform
Helicase_C
DEAD
Ribonuclease_3
ResIII
Ribonucleas_3_3
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111963091
NCBI-ProteinID:
XP_023842070
LinkDB
All DBs
AA seq
1615 aa
AA seq
DB search
MAGLQLVTPASNPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGDLVEQGKRTVFLVNAASSVIQQAASVRTHSDLQVGEYMCVEKT
SSWSREKWSQEMIENQVLVMTCHIFLHVLKSGVLPLWKLNLVVFDECHLAITDHPYRDIM
KLCEGCPCSPRILGLTASILNGKCDPSELEQKIQNLERILRSNAETATDLVVLDRYASQP
REVVLDCGPYLDKSGLSEHLLSELDGALHFLNDCNIPVPREDRDPTFISKQVLSDCRAVL
LVLGPWCADKVAGIMVRELQKYIKHEQEEINRKFLLFTDTILRKVHALCEELFSPASLDL
KFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNEDNYVSWSDSEDEDEDEEVEVKEKP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYVMLAESERTKTFEEDLKTYKAIEKILRNKCSKAAGVGDFEVEPVQDDDNI
LPPYVLRSEEGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTKELKDGRYQSTLYLP
INSPLRVPVAGPIMNCARLAEKAVALLCCENLHKKGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLSGSYPVPEQSYYLYVIGMGSSPPLCPDELNFRR
RKLYPPEGTTRCFGILTAKPIPRLTYCVLPLNVVEDSNTLDLDFKFMEDIEKSEARVGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNVNQPLLDVDTSPCSLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGAQTLPSDFR
YPNLDFGWKKSIDSKSFICLRDEDEEEEEEEDSGDDNCKQQGQTVAPDPGLAAAVSQHPC
SDCHVSSLPEGCDIGQRPEDDRPEDEEPQQPDSASRTSILANGTALIANDNGDHAHLHDG
RDNCQCLPAGSGLPLEKEKELSTTQTTTSVLPVQLSPSTENQNLTPTPPQPQPGTQPPSP
QPQPGTQPPPPQPQPGTSSISLRPQLHIPPHPQQDSSAKGPSLHPSAQPGTSSTPSQPSS
GTSPIPQTAATPSAPSRTHASTPHPQTRDPASTPQQPQPGPASIPSARDPASTPSAPSQG
PQPPIPLQTHLYHLSTTTARDPASTPSPQPPGTQASTPSAQPGTQASIPSTNQGPSLHPL
SRQHRDTTSAPSPQTQPPPPHPARDPRSTPSAQSDECRPGRTSELREGDGHHVNQATSDC
CSPATMTGPAGTAPITTTPLPDPSEALESQEITTSSSVVGDTLGPCPKTLGPNPGLILQA
LTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLG
KKKGLPCRMVVSIFDPPVNWLPPGYVVNQDKSSEDKWDEDEVRDAVCVCARARVC
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atggcaggactccagctggtcacccccgcctccaatcccatgggccctttctttggtctc
ccgtggcaacaggaggccatccacgacaacatctacacgcctaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactattgtctgcttaaatactggctcagggaag
acctttattgcagtactcctaactaaagagctctcccaccaaatccggggagacttagtc
gaacaggggaagaggacagttttcctggtgaatgcagcatcgtctgtgattcagcaagca
gctagtgttaggacccactctgatctccaggttggagaatacatgtgtgtggagaagacc
tcatcatggtccagggaaaagtggagccaagaaatgattgagaatcaggtgctcgttatg
acgtgccatatcttcctgcatgtgctgaagagtggagtgttgccactatggaaactcaac
ctggtggtgtttgatgagtgtcacctggcaatcacggaccatccctaccgggatataatg
aagctatgtgagggctgtccgtgcagccctcggatcctgggcctcactgcatccattttg
aatggtaaatgtgacccgtctgaactggaacagaagatccagaacttggagcggatcctg
cggagcaatgcagagacagctactgacctcgttgtccttgacagatatgcctcccagccc
agagaggtggtactggactgtggaccctacctggacaagagcggcctttcagagcatcta
ctgagcgagctggacggggctctccacttcctcaacgactgcaacatacctgtgcctcga
gaggacagagaccccaccttcatatccaaacaggtgctgagtgactgccgggcggtgctg
ctggtgctggggccgtggtgtgccgacaaggtggctggcatcatggtgagggagctgcag
aagtacatcaaacacgaacaggaagagatcaacaggaagttcctmctcttcaccgacacc
atcctgaggaaggtccacgccctgtgtgaggaactcttctccccggcctctctggacctg
aagtttgtgaccccgaaggtcatccgcctcctggagatcctccatgagtacaagcccttt
gagaggcaacagtttgagagtgtggagtggtacaacaaccgcaacgaggacaactacgtg
tcgtggagtgactcggaagacgaagacgaggatgaggaggtggaggtgaaggagaaaccc
gaggctaacttcccctcgccgttcaccaacatcctgtgtgggatcatcttcgttgagagg
cgctacacggccgtcgtcctcaaccggttaataaaggaggcagggaaacaggacccggag
ctggcctacatcagcagtaacttcatcacaggacacagcatcggaaagaaccagccacgc
aacaagcagatggaggtggagttcaggaaacaggaagaggttctgcgtaaattccgtgcc
cacgagaccaacctgctcatagcgaccagcatcgtggaggaaggtgtagatattcccaag
tgtaacctggtggtgaggtttgacctgcccactgagtacaggtcctacgttcagtctaaa
ggccgagccagagcccctgtctccaactacgtcatgctggctgaaagtgagaggaccaag
accttcgaggaagacctgaagacctacaaggccatagagaagatcctgagaaacaagtgt
tccaaggcagcgggggtcggtgactttgaggtggaaccggtgcaggatgatgacaacatc
ctgcctccctacgtgctccgctctgaggaaggagggccccgcgtcaccatcaacacygct
atcggacacatcaacagatactgtgcccgtctgcccagtgacccgtttacccacctggca
cctaagtgtaagaccaaggagctgaaggatgggcgctaccagtcaaccctctacttgccc
atcaattcccctctacgggtgcccgtcgctgggccaatcatgaactgtgcacgactggca
gagaaggcagtggcgctactttgttgtgaaaatcttcacaaaaaaggtgagttggatgac
cacttgatgcctgtggggaaagagacagtgaagtacgaggaggagctggatctccatgac
gaggaggagaccagtgttccaggcagaccaggatccaccaagaggaggcagtgctaccct
aaagctataccagagtgtctctcgggaagttaccctgtaccggagcagtcttactacctg
tatgtgattggcatgggttcctcaccacccctctgccctgatgagctcaacttccgccgc
aggaaactctaccctccagagggcactaccaggtgcttcggcattctgactgccaaacct
atacctcggttaacctactgcgttctacctctcaatgttgttgaggattccaacactcta
gatttggattttaaattcatggaggacatagagaagtccgaggctcgtgttggcattcct
accacccagtacaccaagcagaatcccttcactttcaaactggaagactaccaggacgct
gtratcattccacggtatcgtaactttgatcagcctcaccgtttctacgtggctgacgtt
tacacagacctcacaccacttagcaagttcccgtcgccggagtatgagacttttgctgag
tactacaaaaccaagtacaacctggacctgtccaacgtaaaccagccactactggatgta
gacacatctccctgtagcctgaacctgttaacccctcgccacctgaaccagaaggggaaa
gccctgccgctcagcagtgcagagaagaggaaggccaagtgggagagtctacagaacaaa
cagatcctggtcccagagctatgtgccatccaccccatcccagcctctctgtggaggaag
gctgtgtgtctccccagcatactgtatcgccttcactgcctgctcacagccgaggagctg
agggcccagacagccagcgacgctggggtaggagcccagaccctgccctctgacttcagg
tatccaaacctggactttggatggaagaagtccatcgacagcaagtcattcatctgtctg
cgtgatgaggatgaggaggaggaggaggaagaggacagcggtgacgataactgtaaacag
cagggccagactgtagcccccgaccctggacttgctgctgctgtttcccagcatccctgt
agtgactgtcatgtctcttcgctgcctgaggggtgcgacatcggccaacgccccgaagat
gacagaccagaggacgaggagccccagcagccagactcggcctcccgcactagcatcctc
gctaacggcactgccctcattgccaatgacaacggtgaccacgcacaccttcacgacgga
cgtgacaactgccaatgtctcccggctggttctggtttgccactagagaaggaaaaagaa
ctatcaacaacacaaaccactacctcagttcttcctgtgcagctctctccaagcacagag
aaccagaatctaaccccaacaccccctcagccccagccagggacccagcctccatcccct
cagccccagccagggacccagcctccacccccgcagccccagccagggaccagctccatc
tccctcagaccccagctccacatcccccctcacccccagcaggactcctcagccaaggga
cccagcctccacccctcagcccagccagggaccagctccacgcccagccagcccagctca
gggaccagccccatccctcagacagctgctaccccctcagcccctagcaggacccatgcc
tccacccctcacccccagaccagggacccagcctccacccctcagcaacctcagccagga
ccagcctccatcccctcagccagggacccagcctccaccccctcagcacccagccaggga
ccccagcctcccattcccctccagacccacctctaccacctcagcaccactacagccagg
gacccagcctccacaccctcaccccaaccgccagggacccaggcctccaccccctcagct
cagccaggcacccaggcctccattccctcgaccaaccagggacccagcctccatcccctc
agccgccagcacagggacaccaccagcgctccatcccctcagacccagcctccaccccct
caccccgccagggacccacgctccaccccctcagcccagagcgatgaatgtagaccaggg
aggacctcagagctccgtgagggcgacggacaccacgtgaatcaagctacctcagactgc
tgcagcccagcaacgatgacggggcccgccggcacagctcccatcaccacaacaccttta
cctgacccctcagaggccctagagagccaggagatcaccaccagcagctctgtagtgggg
gatacccttggcccctgccccaagaccctggggcccaaccctgggctcatccttcaggcc
ctgaccctgtccaacgccagtgacggcttcaacctggagcgtctggagatgctgggagac
tccttcctgaagcacgccatcaccacctacctgttctgtacctaccccgatgcacacgag
ggacgactctcctacatgaggagcaagaaggtgagcaactgtaacctgtatcgtctggga
aagaagaaaggtcttccttgcaggatggtggtgtccatctttgacccaccygtcaactgg
ctgcctcctggctacgtggtcaaccaggacaagagcagcgaagacaaatgggacgaggat
gaggtacgtgatgctgtgtgtgtttgtgcacgtgctcgtgtttgttaa
DBGET
integrated database retrieval system
