Salvelinus sp. IW2-2015 (Arctic char): 111963435
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Entry
111963435 CDS
T05762
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111963435
03015 mRNA surveillance pathway
111963435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111963435
03041 Spliceosome [BR:
salp03041
]
111963435
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111963435
Spliceosome [BR:
salp03041
]
Complex C
Other components
EJC/TREX
111963435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
111963435
NCBI-ProteinID:
XP_023842642
LinkDB
All DBs
Position
LG4q.2:18590967..18597650
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AA seq
679 aa
AA seq
DB search
MAVVVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQARRPTIPGVGGRGRGINLL
RRGLSDIGGGPGGPPAKQRDIEGALLRLAGDQRARRDSXHDSDAEDDDDVKKPALQSSVV
ATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQKL
EVQAEQERKKVEGERRELFDERRAKQTELKLLEQKVELAHLQEEWNMHNTKIVNYIRTKT
KPPIFYLPGRMCSATQKLFDESQKKMNVMFEERRDAFAEYLNKMEARPQRQSLRDNALGK
DLKKEEQEEGKPTGQVVKVTGNRFNVEMEDEATLEKEEGDVGVKRKEDRKKKPEKVREQA
PKKGENEENGQDIRIVEFREVEEQMEVTAVVREAEWQVGDQDNKMEDSLVIGGAEVGNEK
EAEQQQVKVEKENKPLQNQDPTAVSGDQEKSFEMQPTEDEEPHTEVSIALLLEPNPSLEV
SDGASIAPEVQIPLLXAATEPHTTEQSQEADQGAMKQTVDVQPAQYDAAPKELEPLIEES
SRGRGKPKSKDKKGGGGSSSSSSSSSGSSSSGSSGSSSGSSSRSSSSSGSSSSSSSSRSR
SRGRKDRKHRRKPSEGERKKGGGDKSQKSSMGSGRESKGSKDKGSKSDRKRTSSEGCRSG
KMSSRSDRDRKSARKEKRR
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtagtaggttctttgcaagcccagcttgagaaagctaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggccgggatcctaatgaattgagacctggc
caagctagaaggccaaccatcccaggcgttggaggtaggggacgtggaatcaacttgttg
agacgtggactctccgacattggtggaggacctggaggacccccagctaaacagagggac
attgaaggggcccttctgaggctggccggtgaccagcgagcgaggagagattcgrgccat
gacagtgacgctgaggatgatgacgatgtcaaaaagccagcgttgcagtcatcagtagta
gctacctccaaggagcgtacgcgtcgagacctgattcaggatcagaccatggatgagaaa
ggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacgttacagaaatttaag
caggaatctaatgtggcaacagataggcaaaagaaacgcattgagattgaacagaaattg
gaagttcaagctgaacaagaacgcaagaaagtagagggcgaaagacgagagctctttgat
gagaggcgtgccaagcagacagagctaaaactgttggaacagaaagtggagcttgctcac
ttgcaagaggagtggaatatgcacaatacaaaaattgtcaattacatccgcacaaagacc
aagccacccatattctatctgcctgggaggatgtgctcagccactcagaagctctttgac
gagtcgcagaaaaaaatgaatgttatgtttgaggagagacgcgatgcgtttgccgagtat
ctgaataagatggaggctcggcctcaacgccagtctctgagggacaacgctctgggtaag
gacctgaagaaagaagaacaagaggagggtaagcccacgggtcaggtagtcaaagtgaca
ggtaatcggtttaatgtggagatggaggacgaggcaacactagagaaggaagagggggat
gtgggtgtaaagcgtaaggaggacagaaagaaaaagccagagaaagtcagggagcaggca
cctaagaagggggagaatgaggaaaatggtcaagacattagaatagtggagttcagagag
gtggaagagcagatggaggttactgcagtggtgagggaggctgagtggcaggtcggggat
caggataataagatggaggatagtttggtgataggtggggcagaggtaggtaatgagaag
gaagcagaacagcaacaggttaaggtagaaaaggaaaataagccccttcagaatcaggac
cccacagctgtgtcaggcgaccaggagaaaagctttgaaatgcaaccaaccgaagatgaa
gagccacatacagaagtgtccatagccttgctcttagagcccaaccctagtctggaagtc
tctgatggagcatctatagcccctgaggttcagatccccctgctggwggctgcaacagag
cctcacacaacagagcagagccaagaggctgatcaaggcgcaatgaagcagaccgttgat
gtccagcctgcccagtatgatgctgcccccaaggagctggagcctctgatcgaggaatca
agcaggggacgtggaaagcccaagtcaaaggacaagaagggaggtggtggcagcagtagc
tcctctagcagctcctctggctcctcgtccagcgggagttccggctcctctagtggctcc
tccagcaggagcagctcctccagcggcagctcctcttccagctcctctagcaggagccgc
agccgggggaggaaggacaggaagcataggaggaagccgtccgagggggagaggaagaag
ggaggtggtgacaagagccagaagtcgtccatgggcagtggtcgtgaatccaaaggttcc
aaagacaagggctctaagtctgacaggaagaggaccagctctgagggctgccggtcaggg
aagatgtcctctcgcagtgaccgggatcgcaagtctgctaggaaggaaaaaagacgttaa
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